DreINT0166560 @ danRer10
Intron Retention
Gene
ENSDARG00000077950 | tor1
Description
torsin family 1 [Source:ZFIN;Acc:ZDB-GENE-080917-50]
Coordinates
chr21:3631579-3634086:+
Coord C1 exon
chr21:3631579-3631754
Coord A exon
chr21:3631755-3633958
Coord C2 exon
chr21:3633959-3634086
Length
2204 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTGTGTGTGTGTTTATGTAGTAA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ACGCAGTTACAGGATTGGATACGAGGAAACGTTTCCATCTGCCCTCGTTCCATGTTCATTTTCGATGAAATGGATAAAATGCATCCCGGGTTGATCGACAGTATAAAGCCGTACCTGGATTTTTACGATAACCTGAATGGAGTGTCTTACAGAGAGGCCATCTTCATCTTCCTCAG
Seq A exon
GTCAGTGTCTACTAACAGAACACTTACGAATATATTTTTCTTTTCTTTTTTAGAAATTACTTTATAATGCTGAATTGATAATGAACTAAGAAAAGTTATATTACATTGTGATAATATTATAATAAATGCAACCCTGATAGGAAAAAGTCATTTTAAATAAATATAAAGTTTAGAACAGTTACCATTGCAGTTACCATACGTTTTTATTTGCTTTTAAACTGCATTAAAGGGCCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGGGCTGCTCGATCTTGGAAAAAATCATAACTACGATTATTTTGGTCATAATTGTAATCACGATTATTCAAAACGGTTATCAGTTGAAGTCAAAATTATTAGCGCTCCTGATAATTTTGTTTTTTTTAAATAACTATTTCCCAAATTATGTTAAACAGAGCAAGGAATTTTAACAGTATTTCCTATAATATTTTTTTTTTCTTCTGGAGAAAGGCTTATTTTTTTATTTTAGCTAGAATAAAAGCAGGTTTAAATATTTTGAAACCAATTTTAAGGTCAATATTATTAGCCCCCTTAAGCAATATATTTTTTGATTGTCTGCAGAAGAAACAACTGTTATACAATGACTTGCCTAATTACTCTAATTAAGCCTTTGAATTGCACTTTAATCTGAATGCTTGTATTTAGAAAAACATCTAGTAAAATGTTATGTGCTGTCATCATAGCAAAGATAAAACAAATCAGTAATTAGACATGATATATCAAAACTATTATGATTAGAAATAAGTTAAAAAAAAAAAACTTATTTCCATTAAACAGAAATTGGAGGAAAAGGGTTGCTAATATTCAGGAGGGCTAATAATTCAACTTCAACTGTATATATATACAGTTATTTTCCACCCTGCAAAGGAAAGATAAATAATAACAATAGAATAAAAATATAAAACAAACTGTGATTGAAGCATCTTCACCCTAAGAAAAACACTTTAGCTACAAAAATCCTTCAGTCAGGAGCAGTAAGGGATGTTCTCGTCGTTTGATTAATGATAAAACAGGCGGCAGCATTTCGCACTGTCAATTTAATGGTTTCTCTTTCACGTGTCTTTTGATTCTCAACTCGTTTGTTTATTACACATATGAGGGTTAATATGAATAATCACTAATCACCGCGTTTTGACACCTATTACTTTAGATGTCTGTGCTCCTCTGCTCGTCTCATTGTGCAAATGAGAGCGAATGCTGACCGCTTGCTTATGTGTGTGCGCGTGTTGCACACTCACATAAGCACGCGGTCTTTCGCGCTTTTGGTATATGATGCAATAATCGTTTATCTCGATTAATGGTTTTTCAGAATCGTTAGAAGCCATAATCGAAATCGGATTTTCGATTAATTGCACAGCCCTTATTTATATATTTATATATATTACACCTTCTCATTTAAAACATTTTATTTTTTTAAAAGCGGGTGATAATCACACCAAAACGTATTAAAGGGTAAGTGAATTATAACAGAGCGACCTTTTCTGTAACCGTAGTTGTGCTGTGCGTCAATTGTTTAACCCTTTAATGTGACGTGCTCACTGACTGACTGAAAGGTGCATGATGCGTGAGGACAGCAAACACGACGAATAGCCGTTTCACTTTACTTCAACACACATTAATGCTACTCTGTAGGTCTAATGGAGATGTGCACAAATATTCCTAGCAAATCTAATAAATACTGGAGACATACTCCATACATAAATGCTCTAAATCGCACTACAGCAGCGTTTATTTGAGAGCGCACAAGAAGATCTGCGCGCTCTTGAAGCAGCTCACATTTGAGGGGCGTGCAAGAAGTTTTGTGCACGAGCAGAGGAAATCAGCGCGCAGGCAAAGAGATCCACATGCTTGTAGGCTATTACATAAATCTGATCTCGATTTCTAATACTGAAATAACTCCACAGGCATTTGGTATTTCTGTGTAAAAAAAAAAGGTCTGCCGCCACAGCTGGAAAAAATCTTAGAGGAAAGACTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATTTCCACCTGCAATCTCTGTAAGAGTTTTTGTGTGTGTGTTTATGTAG
Seq C2 exon
TAACGCCGGTGGTGAGAACATCGTTCAGGTGGCTCTGGATTTCTGGAAGGACGGCAAAGAACGAGAAGAGATCCAGCTGAAGCATCTGGAGACGGCGCTTTCACTGTCTGTCTTCAACAACAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077950:ENSDART00000111699:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.7=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]