MmuINT0164014 @ mm10
Intron Retention
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30955778-30956575:+
Coord C1 exon
chr2:30955778-30955953
Coord A exon
chr2:30955954-30956447
Coord C2 exon
chr2:30956448-30956575
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TCCATCCCTGGCCAACTCAGCAA
3' ss Score
1.41
Exon sequences
Seq C1 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTCATCTTCCTCAG
Seq A exon
GTCAGCCAACAAGGCTTCTTGGGGACCTCCAAGTGCTAGGATGAGGTTCTCCTGGCCATCCGGGACAGAAGTGCCAGCTTGACAAAGCCATAGGCTCACCTGTCATTTCTCACTTCCCAGTGTCACTCTGGCATAGAAAGGGAGTTGGGGATGAGCCAGAGTGGTCCTCTGGCCCGGCGCTGGGTGCCCCTGCCAGCCACTCTGAGTTCTAAACACTGCATTTACATTGCTTGCAGACAGACAAGCCTTTTGTCCTTGTCTGGTAGCACACTGCAAATAGTCCTGACTTAAAGCTTTGGGAGGACTAGAAATGTAGCACCCCTGGGAGCTGGAGTGTCACATAGTGCTATGATAGCACCTGTTTACCAGGCACAGGACCCCGGGGTCAGTTCTAGCCTTGAGAAGGAATAAAGCCTTGGGTGGGTGACTCCGGCAAGGAGACAGGCGTCTTTCACATGTGATATGGTCTTTGCATCCATCCCTGGCCAACTCAG
Seq C2 exon
CAATGCAGGAGGAGACCTGATCACTAAGACGGCCCTGGACTTCTGGCGGGCAGGAAGAAAAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGCGTCTTCAACAACAAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848:ENSMUST00000028199:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTGGATCCGAGGCAAT
R:
GTGCTTGTTGTTGAAGACGCC
Band lengths:
294-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types