BtaINT0151640 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002837 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr11:100213051-100214936:+
Coord C1 exon
chr11:100213051-100213226
Coord A exon
chr11:100213227-100214808
Coord C2 exon
chr11:100214809-100214936
Length
1582 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GGTTTCTTTGGCAAACTCAGCAA
3' ss Score
-0.86
Exon sequences
Seq C1 exon
GACCAGTTACAGAGGTGGATCCGGGGTAACGTGAGTGCATGTGCGGGCTCTGTGTTCATATTTGATGAGATGGATAAGTTGCACCCGGGAGTCATTGACGCAATCAAGCCGTTCCTGGATTACTACGAGCAGATTGATGGCGTGTCTTACCGGAAGGCCATCTTCATCTTTCTCAG
Seq A exon
GTCAGTGGGAGGCATTTCTTGAGTGGGAATGTACCGAGCCCTTCATTTTCCCAGGGCTAGAATGAGGTGCTGGGGACAAATGTGCCAGCCTGGCAAAAGTAACTTGCAGACGTCTTCCAGGGCAGGGGCAGGAGGAAACGAATGAAGGAAATTGTTTCTGAAAATAGGCAGTTTCGCTACCTACACATGTCATCTCTGGGGTTTATAAAAAGTTGCAGCGTTACACACCAAGTTGTTTTTTTTTTTTTCTCTGCCTGAGAAAACAGATTTTCAGCTCCTGAGGGCAGATGCTTTGTTTTTTTTCTTTGTCTAGTAGCACATACTAAATACTCCTTGATTAAAAATAAACTTTAGAGAACTATCACAAACTGATTCCATCTTAGAAAACTCACAGCATTTCCTGATAATAAGTGACATCAGTAAGAAGTCATTACAACCCTTTAATACATATAGACTGGTTTATATATTTGGCTTTAAGCTGCATAGAAACTGAAAAAAAAAAAGAGTGAACTTAGAGCAGGTACGTTTCCTGATTAGAGTCTTTTTCTTAAAATTAATTTTTATTGGAGTCTAGTTGATTTAGTGTGGTGTTAGTTTCTGTGGTAGTTTGTTGTTCGTCGCTCAGTCATGTCTGACTCTGTGACGTCAAGAACTGCACCACGCCAGGCCTCCCTGTCCTTCACCATCTCCTGGAGTTTGCTCAAACTCATATCCATTGAGTAGGTGATGGCATCTCATCCTCTGTTGCCCCCTTCTCCTCCTGCCCTCAGTCTTTCCCAGAATCAGGGTCTTTTCCAATGAGTCAGGTCTTTACATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGAATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTGAAGCGTCTCCTCCAACACCACAGTTCAAAACCATCAATTCTTCAGTGCCCAGCTTTCTTTATGGTCCAACTCTCAACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTTTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAGCTTTTCTTCCAAGGAGCAAGTGTCAAATTTAAAAACTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAGAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGATCAGATGCCATGATCTTGGTTTTTTGAATGTTGAGCTTTAAGCCAGCTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCCTCTTTGCTTCCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATAGCAAAGTGATATATACGTGTGTACACTGTGTTTTAGATATTTTTAGCCATCTGGGTCACCACAGAGCATTGAGTAGAGTTCCCTGCGCTATGTAGTCGGTTCTCACTAGTTATCTTTTATATATACTAGTGTGTATATGTCATAGAGAAGTCAGGGTGTGATTTTAATCTGGTTTCTTTGGCAAACTCAG
Seq C2 exon
CAACGCAGGCGGAGACCTCATAACTAAGACGGCCCTTGACTTCTGGCGGGCTGGGAGAAAGAGAGAGGACATCCAGCTGAAGGACCTGGAGGCGGTGCTGTCTGTCGGAGTCTTCAATAACAAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002837:ENSBTAT00000003678:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(18.2=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTACAGAGGTGGATCCG
R:
TGTGTTTGTTATTGAAGACTCCGACA
Band lengths:
302-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development