RnoINT0154626 @ rn6
Intron Retention
Gene
ENSRNOG00000006894 | Tor1a
Description
torsin family 1, member A [Source:RGD Symbol;Acc:628863]
Coordinates
chr3:9800322-9803390:-
Coord C1 exon
chr3:9803263-9803390
Coord A exon
chr3:9800909-9803262
Coord C2 exon
chr3:9800322-9800908
Length
2354 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CGTCTGTCTGTCTTTCACAGGTG
3' ss Score
12.78
Exon sequences
Seq C1 exon
CAATGCAGGGGCAGAAAGGATCACAGACGTGGCTCTGGATTTCTGGAGAAGTGGGAAGCAGAGAGAGGAGATCAAGCTCAGAGACATGGAGCACGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACA
Seq A exon
GTAAGTGTGGCCGTCCTTCGTCCTTCCAACCCCTAACTGCGCATCCATGAGCTCCCGGGACCCAGCAGAGTCCCTGAGTAACGTCTGTTAAGGAGCTGCAGGGGGCTTTAGAGATGAGTTGGTTGAGACAGGGTTTGCTCTACGTCCCTTGGAGAGGAAGGGCAGGCAGTTGAAGCAGAAGGCCACCGTAGATGGCTGCAGGGAGGGTGGTAACTGGTATGGCCTCTCTCCCCCTTTGCAGTGTCCTAGAGCTCTGCCCGTGGGCCTTCCCTCTGGAGCAGACACTTGACCTGCCTTGTGACTCTGTTTGTTACCTTGTGGGGTAGATAGCTGCCTATTGTCTGTTACGAGCACACAGGCTCAGGGGAGGAGCTCGCCCAGCACCGGGCAGACTGTACTCAGTTTTTAACTGGCGCTCAGCTGCTTCTTCAGCTACTGTCATGCAGATCTTTGACCTTGAACCCTAGGCAGCAGATGGCCCTGAGGGTGACTCACTGGTTATCTCACTGGTAGCTAAGGTGACGACTACCGGAAACATGCCCACCAAGAAATCTGCATTCAAGTTAGGAGACTAGTGCAGTGTATTCTGTGCAGATGGAGTACTACTGAGAAAAGACAAACATTTTGCTAAATGTTGAAAAGTCTCTCTTGATGCTACAAAGGATGACCGCACAAAACAGGAAATACAGGCCAGCAGTCCATCAGAACACTGTTGCGTGCGTGTGTGCGTGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGTGTTTGTATATCCAAGACAGGAGGACCTCTCTCGGGACTATGGCAGGGATCAGAGGCAGTTGGGAACTGTCATGGCTGGTGGACAGTAGTGCTGGGGTTGACAATGAGAAGAGCAGTCTTGGGAGGAGGGCACATGTGTTGGGCCACCCTGGAAGGAGACATTTACTGAGGACACACATTTCAGTTCAAGGTATATGGGTTTGGTTCACACTCAAACCCAGGGCCATGCACATGCCAGCTAAGTGCCCTGCCACCAGCCTAGCTGGTGTTTTTAAGGCCATGTGACCAACTGAAGTCACTGCTTCTGCTGAGCGATTGGTGGGTCCTGTGGTTGGATTCCTGTCATTGGGGTTGTGCACGGGGTCACCTCCCCAGCCAGGCAGATGCCACCAGCCATATCCTCAGGTCTTGGCATCTGGCACAGAGTAGGCCTTCAACGCAGAAGTTACACTGGTGACTGCTCCACAGTTGGTTTGTTCTTTGTTGTGGCCACAGGTCCTCCCCCAAGTACTGTATGTGTGGAGCACCATTGGGAGAACACAGACCCCGGGCTCTCTGCACAGCTTTCACGGGAGCCAGAGCACAGAGATCAATAGGCTAAGCAGGACATCAAGACGTGACCTGGGTGCTCTGGGGCGTCCTGTGGGTGCTGGGTCGAGTGTTCCAGGACTGGGAGGTGGGAGGCTGAGCCAGGCAGGGCCCGGCTTTTGTAGGGAAGATGTCAGAGCCCAGACTTGTGTGGTGCACAGCCTTGTTGGCGCACCTTACTCCCCAGGAGTCTAGGTGTTGCTTCCAGAATGCTCTGCATGGTTTAGGCACTGGCAGGCAGCAGCTGCCGATGCCTTCATGCAGGCTCAGCTGTGGAAGCTCTAGCTGGAGACTGACTGGTGAAGTCTATGATAGCCCTCCCTTATCTCTTCTTTGGAACCTCTTCCAACCTGTCCATCAGCTTCCCACCACACTGCCTGGGTCCCAGCACACAGTATGGTACATGTGGCCCTCTGGTCTGCCTCCCATCTCTAAGGCACACTAGAGAGGCCTTTCTAAGCCTAGAGCACCCGTTTGAAAGCTTTTTTGTGTTTTTCATTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGTGTGTGGTTGTGAGCAGCCTGAGGAATACTGGGACCCAACTCAGGTCCTCTGCAACAAGCAATAAGTGTTGGTGTTATTTTGTATTTGTGTGACAGGGTTTCTCTATGTAGCCCCTGGCTGTCCTGGAACTCATTCTATAAACCAGGCAGGCCTCAAACTCCAGAGATCCACCTGCCTCTGCCTCTGGAGTTCTGGGATTAAAGGTGTGCACTGTTAAAGAGGTTCTTAGTGAACCCCAGAGGTCCCTTTCTGTCCCCCTGCCCTTGCTGTCACAGCTGCAGCCCAAGGCAGTGTTCATAGGCAGTTGTCCACTCCTGTCTCCCTCCCTCACTGTGTGGAGCATGGTCTCCTCGCTCTGGCTCAAACAGGCCCCATGAACATGTAGTAATCACTCCGTTACTACTCAGTATGACATGGCGTCTGTCTGTCTTTCACAG
Seq C2 exon
GTGGCTTCTGGCACAGCAGCCTCATTGACCGGAACCTCATAGACTATTTTGTCCCCTTCCTGCCCCTGGAGTACAAGCACCTGAAAATGTGCATCAGAGTTGAGATGCAGTCCCGTGGCTATGAAGAAGATGAGGACATAATCAATAAGGTAGCTGAAGAGATGACGTTCTTCCCCAAGGAGGAGAAGGTCTTCTCTGACAAGGGCTGCAAGACTGTGTTCACCAAGCTGGACTACTACCTGGATGACTGAGCCCTGCTGCCAGGTGCTCTGTAGTCCGCTCCTCTCCCCACAAGAGGCTTGGACACTTCCTGCTGAGGCTAGCGGGGATCCCATCAGGGGCGGTTTCTGCTCTTTGGAGCCTGCAGGTGGCCATGATGTAGGGACCACAGATGCAACATGGACCTAAAGCTCCTGGAGCCTCCAAAGGACGAAACCAGCTTCCAGCCTGCCCATTCTGGGCTCATGATTTTTTTAAAATTATGTTTTAATTTCAAGTGTTTCTGTTTTGAGGCAGGACAAGTGAGTTTTACTGCAAATGTGATAACTTTATTTAAAATGGTTTTTAATACTATGAGAAGCCTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006894:ENSRNOT00000064660:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]