HsaINT0171026 @ hg19
Intron Retention
Gene
ENSG00000136816 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:11995]
Coordinates
chr9:132571184-132573560:+
Coord C1 exon
chr9:132571184-132571311
Coord A exon
chr9:132571312-132571620
Coord C2 exon
chr9:132571621-132573560
Length
309 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGCTGTGTCTTGTTCTGCAGGTG
3' ss Score
10.72
Exon sequences
Seq C1 exon
CAATGCAGGCGGGGACCTTATAACTAAGACGGCTCTTGACTTTTGGCGGGCCGGAAGAAAGAGGGAAGACATTCAGCTGAAGGACCTGGAACCTGTACTGTCTGTCGGAGTCTTCAATAATAAACACA
Seq A exon
GTGAGTCCACCAGGGTAAAGGAGCCCCTTAACTGTCCAGCAGTGAGCCGTCTGCTCTTTCATTGAGTGTTTCACAAAGCCACAGGATCCCACTGGATTTCCTCACTTTGCTAAAGTCAGGAATTTTCTTAGGGCATACTGTGCTAGAAACCAGTGAGTGAGTGTCCAGCTGAGTCCTGCATGGGCTTGTTGCACACTGACAAGAGACTCTCTCAAGGGGTACGGACATGAGGAATGTGCTGAGGGTCGGGACTGGAGCTTGGCCAGGTGGCGGTGGTGGCAGGAAACCCAGCTGTGTCTTGTTCTGCAG
Seq C2 exon
GTGGCCTGTGGCACAGTGGACTGATCGACAAAAACCTCATTGATTACTTTATCCCCTTCCTGCCTTTGGAGTACAGACATGTGAAAATGTGTGTGAGGGCCGAGATGAGGGCCCGTGGTTCTGCCATAGATGAAGACATTGTCACAAGAGTGGCAGAGGAAATGACGTTTTTCCCCAGAGACGAGAAAATCTACTCAGACAAGGGCTGCAAGACTGTGCAGTCGCGGCTGGATTTCCACTGAGCTCCTATCCAGATGGGGTAGGAGACAGCTGGGAGGCTCCGCACGCCAGAGGCCTTGCCTTTCAGAAGAACCCTGAAGACCGCTTTGGGGTTTTGCCTGTTTGCACCTTAGACTTTTGGGTATAGAATCTTTTTTTTGAGAAGAGGTCTCACTCCGTCATCCAAGCTGGAGTGCAGTGGTGCAATCCTCAACTCACTGCAACCTCCGCTCCCGGTTTGAGTGATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCTGGGATATAGAATCTAAGAGTTGATTGTGGAAAACACGTGAATCTATTGCGCGCATTTGTCATTTAGCAAGATGGCAGCAGTCCAGCTGTTCTTTGCAGCTGGAGATGAACTTTTAAAAATCCCCTTCACACTTAATGTACTGACCGAGACAGAAGTACCTGAAAACAGCTGTGCATGGCAGGCCCGGCAATAGCTTCTGACCCACAGCACCCGCGCCTCAGAAGCTACGGTCACAACTAAAGGAGTCCAGGGACTTGCTGCAGGCTGGGGGGCACTGGGTGGTTCTCACCAGCAGGCTGCGGGGCACTGTGTTCTCATTGGCCAAAAACATCCTTTTGCTCTGTCTCGTTCTTTACACAGAGTTCACTGACTTGAAGTATACTCAGTTAAAATCGGGGCTGGAGGTGCAGACGGTGTCTGACCGGAGGATGTGGCCGTGCCCGCCGAGCACTCTTGATCTGAGCTGACCTGTGTGTGTGTGTGTGGGGGGGTGGGGCCTTCACCTAAGACCTCTGCAGCAGACCTGGACAGACAGGCCCCTCCCGCCTGTCCATCGCTCTAGCTGCTAATACAGCCCTGGCTGTGGAATCCTTCACCGTCTCAGCTGGTATCAGCCCCAGCCTGCCTTGTGCCATATCTCAGCTTGGATCTCTGCTAGAGTCCCCCCAACCATATATCATAGAGTTGAATCACAATGAGACCGTTGGCTTTGAATTTGAGTCGTTGGTTCCCATGGTGAGATGCTTGTTAAGACTTTATACTTGGGTCAATCTCTCACTTTATTTTGTAGAACCATTTGAAATCCTAGGATGTGCTTGTTCTGGAAGGATGACATGGGCCCAGACTGAACAAGTCAGCTTGATGATCTTAAATGATGGAAGTATAGGACGTTGCTTATTTTAAAACAAGGGAAGGACACAAAATGGAATGACTGCTTAGTCCTTTCTCAGATACTCTTAAAACAATTTTTTATTGTTAAATTTGTGGTAATACATGGTCACAACCGTGGATCAAACAAGGTCAGTCTAAAGTGGCAGGTCCTAGGTGTGACCTGATACCACCACCCTTTGTGGCAGCACCGGGCTGGACTGCCCTGATCCCTGGGACGTGAGACTTAGCTTCCAGCCAGTGTGAATCATTGTATCTGTCTCATAATCACAGCACAGCTGCAGACACAACAACGTGCAGCATTTTTTACATAAAAATATGGTAGAATTAATTTATGACATGGAAATGCCTTACGTGGTATCACACTTAGTCTTGAAAAAAACACCAAGGTGACGTTTAAAATTTTTAGTACATATCCTCAAATTGGAGCTAAGTTATACTTCTTTTATAACCTTTTGGGCATCTGGTCGAGAGAAGACAAGATTTTCTCTATTTACAGTGAGGCAATAAATATGTTTGCCACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136816-TOR1B:NM_014506:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGAAGAAAGAGGGAAGAC
R:
AGCTGTCTCCTACCCCATCTG
Band lengths:
351-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)