GgaINT0125856 @ galGal4
Intron Retention
Gene
ENSGALG00000004180 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr17:5696937-5697984:+
Coord C1 exon
chr17:5696937-5697064
Coord A exon
chr17:5697065-5697369
Coord C2 exon
chr17:5697370-5697984
Length
305 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCTTCCTTCAACTCCTGCAGGTG
3' ss Score
10.92
Exon sequences
Seq C1 exon
CAATGCTGGTGGTGACTTAATTAATAAAGCAGCTCTTGACTTCTGGACCAGTGGGAAGCGCAGGGAAGATATTCAGCTGAAAGACCTTGAGCCCATGCTGTCTGTGGGAGTCTTCAATAACAAGAACA
Seq A exon
GTAAGTCACTTTCCACTAGAAAATGAGGAATTGCTTTACTTCACACCACAGGGTTAATCTGAGCAATCTGCACCTCACCTACCCTGGCTCTGCACTGCTTTTTTTGACCCCCACCTTCCTCAGTGCCCCACCACCAGGCCCTTTGGTTCTTCCACTTCAGTGTCATCTCCTCCCAGGGAAGTTTTCATTACAGAAGCTACTCACGGGTAGATAAACCTCCTTGTGAATCCAGTCTGGTCTGCAGAGCCTACCCAAGTTGAGAGAATGCCCTTCCTTTATCTTTTTCCTTCCTTCAACTCCTGCAG
Seq C2 exon
GTGGACTGTGGCACAGCAGCCTCATCGACAGGAACCTCATTGACTACTTTGTTCCCTTCCTGCCCCTGGAGCACAAGCACGTGAAGATGTGTGTGCGGGCTGAGATGATCGCCCGTGGGCACGAAGTCGATGAGAAGGTTGTTGAGGCAGTGGCAGATGAAATGACATACTTCCCAAAAGAAGCAAGGATCTACTCCGATAAAGGCTGCAAGACTGTACAGGCCAAGCTGGACATCCACGAAGACATTGCAAAAGCCATGGACTGATGACCCTTCACCTCTCCAAAGCACTTTCAGAGCCTTTGGAAACTTGTCTATTTGCACTTAAGCTTTATTATTTTTTTTTTTTACTATTGCAGGGAATGTGGTGAAGATCTTAGAGTGAGTGGTGTGGGCTTTTAAGCTTTTGTTTTTTAACATAAAATCCCACTGTTCATCTCTAAACTGGCTGGTATCCAAATATTGCCCCCATTTTTTTAACCTATGAGAAGACTTGTGAGCGTGACACCCGTGGTACTGGATACAGCTCTCCTGATTTACTCCTTTAAGTGCTAGGATTGTTAAATCCTTCACTGCCCTTTGCACAGACCTACAGCAGAGGAACTCTTGCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004180:ENSGALT00000034684:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAAAGACCTTGAGCCC
R:
GTGCTTTGGAGAGGTGAAGGG
Band lengths:
345-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]