MmuINT0164015 @ mm10
Intron Retention
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30956448-30959015:+
Coord C1 exon
chr2:30956448-30956575
Coord A exon
chr2:30956576-30956811
Coord C2 exon
chr2:30956812-30959015
Length
236 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCGCTTGTCTTGTTCTGCAGGTG
3' ss Score
11.13
Exon sequences
Seq C1 exon
CAATGCAGGAGGAGACCTGATCACTAAGACGGCCCTGGACTTCTGGCGGGCAGGAAGAAAAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGCGTCTTCAACAACAAGCACA
Seq A exon
GTGAGTCCACTATGGAGCGGGGAACCCAGTGCTCGGCTGGCATTGAGTAGATTCTCAGCAGTGTGTCTTTTCGAAGCCAGCGATACCCTTGTTTGTGGCTTTGCTGCCACAGGGAGATTTCTTAGGGTATTTTGAGGGCACATGTCACTTGACAGAGTCTCTGGAAGGGTGAAGGCATGAAGGATGGGATATGGCTAGGTGGCAGTGACAGGAGACCCGCTTGTCTTGTTCTGCAG
Seq C2 exon
GTGGCCTGTGGCACAGTGGGCTAATAGACAAAAACCTCATCGACTATTTTATCCCCTTCCTGCCCTTGGAGTACAAACACGTGAAGATGTGTGTGCGGGCAGAGATGAGGGCCCGAGGGGCTGCCGTCGATGAGGACGTCGTCACCAGTGTGGCAGATGAAATGACCTTCTTCCCCAAGGATGAGAAGATCTACTCAGACAAGGGCTGCAAGACTGTGCAGTCCCGGCTGGATTTCCACTGAGCTCTTCATCCAGTGGAGTGGGAAGATTCAGGGGAACCTCCCACCCCGTTCCAGGCCTTGTCATGGAGCACTTTGAAGAGCCCCCTTGGGGCTTTGCACATTTGCACCTGTGGACTTGGGATGCTGTCAGTGCGGCATCTGAAGATGAACTTTAAGAATGCTCACACTTTACTGTGAATCAAGTGCCTAAAAAAAAAAAACCAAAACTGTCTGAACGCAGGCCAAAAGTCCTGTGTGGCCAACAGCACCCATGCCTCAGATGCCACTAATGGGCCTGCTGCACCCTGCTGTACCCTCAGGGAGGCAGGGTTTCCTACCACTGGGCTGTTTTTTTCTTTTCTGCCTTGACCTGGTAATCACAATTTCGGAAGCTGGTGGCACTGACAGATGCTCACTGCTAGAGGGGAGCATGTGGGCTTGACCTTGGCTGGACTGTCAGTGTGAGCAGTGGGGGCTCCCTCTGAGGCCCCTGGAGCACACAGGGACACAGAGCCTTTGAGTTTATGCCTTCTGTTCGCTACTGCTCGCAGCCCTGGCTGTGGGATGCTCTGTCCAGTCTCCCACTGTGTATGGGTCACAACCTGCCTTGTACCTTGCCTATCAATTGTTAGATTCACCCAGCCTCATCCCTGCTTGCATCAGGATGAGCTGTCATTTTTGAAGGAGGTCTTTGGACCCTGTTTGCCTGTTACACTTGCTCTGAAGGTCAAGCTCCGATTTGCAGAACATGCATAGGAAGAGAAGCTCTAGGCTGGGGCTGACCTGGCCAAACCCCATGGGAAGGAGTGTGTCTGCTGTACACCAGAGATGCCGTTTTTTTTTTTTTTAAAGGACATGCACATATTTAAAATTTATATTTTTACTTCTAAAGCTTAGGTAATAAATGTAAGATGCCATGCATTTTAAAACCTAGGAAGTGCCACAAGTGCTGGGGCACACCTTTAATCCCAGCACTCTTGAGGCAAAGGCAGGTAGATTCTGGGAGTTTGAACCCAACCTTGTCTACTTAGTGGGTTCCAGGACAGCCAAGACTACACAGCCCTTTTTCAAAAAATAAAGACCTAGGAAGGACATAAAATAGAATGAGGCTTATTCTCAGGTTTTTAACGTTGCTGGATATGGGGCACAATACCCATGATCCCAGCAGGAAGATCAGGGTTCAGGGTTCCTCAGCTGGCTTGAGTTTAAGAACTGCCTGAGTTACATGAAACTCAAAAGAAAAAAAAAAAGGGTCTTATTGTTAATTGTGTAGAGAGTAGAACTATACTGGCACAACTCAGCTTGTGGGTTCTGGGTGTAATCTCAGGATGACGCCTTGAGTGGCATCTGGGCTGCTCTGACTGTAGGGAGCTGAGCCTGTGAGCCTATCCTTGTGAACCATTCTGTCCTACAGTTGCTATGCAGCTGCAGACATGGAAACTCTGCCATGTTTTTATACAATGTGGTAGAATGGCTATTTTTATAACACGGAAATGCCTTAAAGAGAATCACAGCTTGTCACTTAGAAATGCCACGCTGAGCTGGGTGTGGTGGTGCTCACCTTTAGTCCCAGAACCTGTGAGGCCATGGCAGGACTGTCTCAAGTTTGAGGCAAGCCTAGGCTACACAAGGGAATGCCAGGCCAGTGGTGTGCATGCCTGCAATCCTAGCACTTCGGAAGAGGAGTTTAAAGTTAGTTGAGCTACGTACAGAGAGACCCTGTCTCAAAGCAGGAAGCAAACCAAAACGTGCCAAGGTGAGGGTGACTTTCAGGCCATAGTCTTGGACTGGAGCCGAGTTACTGTTTGTGACCTGTTGGGCTCCCGGTTTTCTGTTTACAGTGATGTAATACGTGGACACGTGTTGGCCACCTTTGGACTGCTGTTACTGATCTCCAACTTTGAAAGGCCTGGTGTGGCCTGCCCCAGCCTCCCTGTGAGAACAGAGATGGACGCAAGATAATAAAAGCATTGCGAGACGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848:ENSMUST00000028199:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCGTCTTCAACAACAA
R:
TCCCCTGAATCTTCCCACTCC
Band lengths:
303-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types