BtaINT0151641 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002837 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr11:100214809-100215693:+
Coord C1 exon
chr11:100214809-100214936
Coord A exon
chr11:100214937-100215389
Coord C2 exon
chr11:100215390-100215693
Length
453 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGCTGTGCCCTGTTCCCCAGGTG
3' ss Score
9.39
Exon sequences
Seq C1 exon
CAACGCAGGCGGAGACCTCATAACTAAGACGGCCCTTGACTTCTGGCGGGCTGGGAGAAAGAGAGAGGACATCCAGCTGAAGGACCTGGAGGCGGTGCTGTCTGTCGGAGTCTTCAATAACAAACACA
Seq A exon
GTGAGTCTCCCTGAGTGGGTGCCCTCTGCCCTCCGCCCTGCCCACAGCATCACTGTTCTCTCTCTTTTTTTTATTCTGGCCCTGCGGCTTGTGGGATCTTAGTTCCCCAACCAGGGATCGCACCTGTGCCCTCTGCAGTAGAAGCTCCGGTCCTAACCACCAGACTGCCAGGAAAGTCCCAGCCGTCTCTCTTCCTTTCACAAAACCACAGAATCTGCTCACCCCTGTAGCTTGGCTGAAGTAGGGACTCTTTTTTTGGAGGGCATGCTATTCTAGAAGCCAGTTAGCGGGGGTAGCCAACCAACCTTACATCAGCCTTGACCAAAAGCGAATCTTGAGGGCCGCAGACGTGGGGAATGTGCTGGGGATCAGGACAGGCCCTGTAGGAGCCGCACGCTGGCGGGGTGACAAGGACAGAAGTGGCAGGAAACCCAGCTGTGCCCTGTTCCCCAG
Seq C2 exon
GTGGCCTGTGGCACAGCGGCCTGATAGACCGGAACCTCATCGACTACTTCATCCCCTTCCTGCCCCTGGAGTACAGACACGTGAAGATGTGCGTGCAGGCGGAGATGAAGGCCCGCGGTTCCGCCGTCGATGAAGACGTCGTCACCCGAGTGGCAGAGGAGATGACGTTCTTCCCGAAGGACGAGAAAATATACTCAGACAAGGGCTGCAAGACCGTGCAGTCACGGCTGGACTTCTACTGAGCCCTCGTGCAGGCGGGCTGAGACGCGAGCAGGTGCCCAGCAGACCTGGGGCCGGGCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002837:ENSBTAT00000003678:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAGACGGCCCTTGACTTCT
R:
ACGAGGGCTCAGTAGAAGTCC
Band lengths:
356-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development