RnoINT0155077 @ rn6
Intron Retention
Gene
ENSRNOG00000024181 | Tpsab1
Description
tryptase alpha/beta 1 [Source:RGD Symbol;Acc:3066]
Coordinates
chr10:14701674-14703001:-
Coord C1 exon
chr10:14702736-14703001
Coord A exon
chr10:14701838-14702735
Coord C2 exon
chr10:14701674-14701837
Length
898 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
GGCCTTTCTCTCACCCACAGTAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAATAAGGCTGACCCCAACAAGCTCAGGGTACAGCTTCGTAAGCAGTATCTCTATTATCATGACCACCTGCTGACCGTGAGCCAGATCATCTCACACCCTGACTTCTACATCGCCCAGGATGGGGCAGACATTGCCCTGCTGAAACTCACTAACCCTGTGAACATTACCAGCAATGTCCACACTGTCTCCCTGCCTCCCGCCTCAGAGACCTTCCCCTCAGGGACATTGTGCTGGGTGACAGGCTGGGGTAACATCAACAATGATG
Seq A exon
GTATGTGGTAGAGATGACTGAGGGCTAGACAGGTGAGGGCGTGGCCACGCCACGACCCCAGCACAGGGCTTCCCTCCAACTTGTGAGATGGAAATCTGAAGACCTAGTAAGGGGGAAGGCGTCAGGACAACAGGGCTCCCAGATTCCATAAGCCAAGGATACGCCAGTGTAGTTAGGATAAGTCATCTCGGTCCCTCGAATCTCAGGTGCTTCATGTCAAAAGGGGCCATAGTCTGCTTGTATTTTGGAGATTTGATTGAGGAAGGGTAAGACCACACGTACCAACAATGTCTCACACGCACTGGTTACAACTTCAGGGACCGGCATTTCACAGGCTGTGTCAGGGACCAGCATTTCATGGGCTGTGACCCAGGCCACAGGTTTTGTGTGGAGCTGGACAACTCCCTTAGGAGCCTCCAGCACCAGTTTCCCTTCTCCCTATCGGTCTTGCTTAATTTCTTTTGACAACTCAGAATAGAGAGACCTTCAGGGATAGGGCCATGAGCAGGCAGGCCCTGGTCGTGGACCTCAGGATGGATCCAATCTATACAGAGGCGGGGCGGGAGAATAGTGTCCAAGACCAGGGCTCCACTGGAATCCTCTACCCAGCCTGGGCCAGAGCCAGCCACGCTGAGGGGAGATGACAGACTTTGCCCCTGCCCTTTACTGACCAGATGGCTGGCTAATGACCTTCAGGACTGTCCTCTTTCTCTGAATAAGGTCAGAAATCCAGGTCCAGCCTGGAGGAAGAAACCAGGTTGGCAGAGCTGAATGAAATGGGCCTGGCTCAAAGAGGGCCTTGGGAACAGAACTATTCTCAGAGAACAGGGTGAGCTGAGCCCATAGCAGCCAGCCACCTGGAACCCTGCCCACGTGATGGCCTTTCTCTCACCCACAG
Seq C2 exon
TAAGCCTGCCACCGCCATTTCCTTTGGAGGAGGTGCAAGTTCCCATTGTAGAAAACCGCCTCTGTGACTTGAAGTATCACAAAGGTCTCAACACAGGTGACAACGTCCACATTGTCCGTGACGACATGCTGTGTGCTGGGAATGAAGGACATGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024181:ENSRNOT00000024767:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTCAGGGTACAGCTTCG
R:
TGGACGTTGTCACCTGTGTTG
Band lengths:
357-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]