HsaINT0171531 @ hg19
Intron Retention
Gene
ENSG00000095917 | TPSD1
Description
tryptase delta 1 [Source:HGNC Symbol;Acc:14118]
Coordinates
chr16:1306798-1308223:+
Coord C1 exon
chr16:1306798-1307063
Coord A exon
chr16:1307064-1308059
Coord C2 exon
chr16:1308060-1308223
Length
996 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
ACGCCCCCCTCCGCCCCCAGTGC
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGACATCAAGGATCTGGCCGCCCTCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGACCAGCTGCTGCCGGTCAGCAGGATCATCGTGCACCCACAGTTCTACATCATCCAGACCGGGGCGGACATCGCCCTGCTGGAGCTGGAGGAGCCCGTGAACATCTCCAGCCACATCCACACGGTCACGCTGCCCCCTGCCTCGGAGACCTTCCCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGACGTGGACAATAATG
Seq A exon
GTGGGTGTTGGGGACAGCGGGAGGCCGGGCCAGGTGGGCACCAAGTCACAGCCACAGGCCAGTCCGTGGGGTGACAGGGTCCCTCAGGGCGGCTCAGGGAGGGGGACTGTGGAGGCCAGGATGGATGGAGCAGGCGGTGGCGAGAGGCAGCAGGTGCCCTGAGCAGAGACGGTGAGTCCAAAGGGCCTGGGCGTCCCCCACCCCAGGGGTTTGGAGAGTCCCTTAGCACCTCCGTGCCTCGGTTTCCCCTTGCCTGAAAGGGTGCATCAAAAGTTTGTACGTCACGGACTTGCTATGTGGAGAGAGAAATCACACGGGGGTCTTGCTGGAAGGAGAGAGACCGGTGCTGGGATGAGACCTGCCTGCCCTCCATCCCTGTGCTACAGACAAGGCAGGGGCCTGGGAATCGGGGTCGTGGCAGTGCTGTGGGGGGCTGGACGAAGCTCACTGTGGCCCTCCACGAGGCACATTTTCACTTCTAGAAGGTCTTGTCCCCATTTTATCCACAATTCAGAGCAAAGCTTTGGGGTACAGCCTGAGCGGCAACCCTGGGCTGTGACCTCTGGGTCACTCAGAAGGGGCCTGAGCCACTGTCCCGCTATTCCGCCCCACACAGCGGGGAAGCTGAGCCCAGCGCCCTGTGTTCCCCTCGGCTAGGGCCAACCGTGGACCATGGGCCTAGCCCAGACGAAAGTCAGCTGAGCCCAGGGGGAGACACGGGTCGGGCTCTGCACCCCCGTGCCATGGAGCCCAGCTTGGCAACCTCCAGGGCCCTCCCCTCCCTTCCCCAGATGGGGCTTAAATGAGGCCAGGGACCCAGGACCAGCCTCAGCGGAGGGGCCTGGACTGCATTCACCGCCCCTTCCCCGGGGCTGCAGGCACAGAACAGCACTGGGCCCATGGTGCCATCTCCCCTGCCCGTGACTCTGCCACCAAGTCCACGAAGCAGCACCCAGCCGGCCCCAGACCCGGCTCCACGCCCCCCTCCGCCCCCAG
Seq C2 exon
TGCACCTGCCGCCGCCATACCCGCTGAAGGAGGTGGAAGTCCCCGTAGTGGAAAACCACCTTTGCAACGCGGAATATCACACCGGCCTCCATACGGGCCACAGCTTTCAAATCGTCCGCGATGACATGCTGTGTGCGGGGAGCGAAAATCACGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095917-TPSD1:NM_012217:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(43.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCGTGCACCCACAGTTC
R:
TGGCAGGAGTCGTGATTTTCG
Band lengths:
344-1340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)