GgaINT1018297 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481971-2482190:+
Coord C1 exon
chr12:2481971-2482006
Coord A exon
chr12:2482007-2482078
Coord C2 exon
chr12:2482079-2482190
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACGCCCGCTGTGCCCACAGATG
3' ss Score
10.16
Exon sequences
Seq C1 exon
CCGGCAGCGCTGTGCCGTCTGTCCTGGAGAACGCAG
Seq A exon
GTGAGGACACGGGGGTGTGGGGCGGGGGGTGCTCGGTGCGCTGCCCCCAGCCAACGCCCGCTGTGCCCACAG
Seq C2 exon
ATGCAGTGACATTCGAGGAGTGCGGCCGGCGGGACGAGAGGCTGCAGCAGAAGCAACGTGTGGTGGGTGGGATGCCCGGCAACTCGCCGTGGACCGTCAGCATCCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTCTGTCCTGGAGAA
R:
GTTGCGGATGCTGACGGTC
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]