BtaINT0095638 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084130-51084377:+
Coord C1 exon
chr22:51084130-51084165
Coord A exon
chr22:51084166-51084256
Coord C2 exon
chr22:51084257-51084377
Length
91 bp
Sequences
Splice sites
5' ss Seq
CACGTATGG
5' ss Score
4.53
3' ss Seq
CAGCACACTCTGTCCCCTAGACC
3' ss Score
5.59
Exon sequences
Seq C1 exon
ATGATGACCAACAGCCGTCCATCCTGGAGACTGCAC
Seq A exon
GTATGGACCTGGGCCAGGCGTTCCTTGTGGCCCCTTTGCACCCCCAGGTCCATCCAGTTGGGGGTCTCACCCAGCACACTCTGTCCCCTAG
Seq C2 exon
ACCAGGTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGACCAACAGCCGTCCA
R:
CGCAAGCTGACTGTCCAGG
Band lengths:
151-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]