RnoINT0094896 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860712-116860942:+
Coord C1 exon
chr8:116860712-116860747
Coord A exon
chr8:116860748-116860833
Coord C2 exon
chr8:116860834-116860942
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACCCTACCCTCCCCCCCCAGTCC
3' ss Score
10.15
Exon sequences
Seq C1 exon
ATGATGACCAGCCACCATCCATCTTGGACCCCCCAG
Seq A exon
GTATGGGGTTGGACCAGTTGTGGGTACACCTTCTTTGACGCTGAGCCTCACTGAGGGTTTCATCCCACCCTACCCTCCCCCCCCAG
Seq C2 exon
TCCAGGTGCAGTTTGAAAAGTGTGGCAAGAGAGTTGACCAGAGTAATAGACTTCGTGTGGTGGGGGGTCATCCTGGGAACTCACCGTGGACAGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=45.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCAGCCACCATCCATC
R:
CGATTCCGCAAGCTGACTGTC
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]