HsaINT0105696 @ hg19
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49722695-49722939:-
Coord C1 exon
chr3:49722904-49722939
Coord A exon
chr3:49722816-49722903
Coord C2 exon
chr3:49722695-49722815
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CAGCCCACCCCATCCTACAGACC
3' ss Score
5.02
Exon sequences
Seq C1 exon
CTGATGACCAGCCGCCATCAATCCTGGACCCCCCAG
Seq A exon
GTTAGGAGTTGGGCCAGTTATGGGTCAGGCCCTTTAGCCCACGACATCCACACAGTCTGGGTTTCATCCAGCCCACCCCATCCTACAG
Seq C2 exon
ACCAGGTGCAGTTTGAGAAGTGTGGCAAGAGGGTGGATCGGCTGGATCAGCGGCGTTCCAAGCTGCGCGTGGTTGGGGGCCATCCGGGCAACTCACCCTGGACAGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-MST1:NM_020998:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCAGCCGCCATCAATC
R:
GATTCCGCAAGCTGACTGTCC
Band lengths:
154-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)