MmuINT0164367 @ mm9
Intron Retention
Gene
ENSMUSG00000024173 | Tpsab1
Description
tryptase alpha/beta 1 [Source:MGI Symbol;Acc:MGI:96943]
Coordinates
chr17:25480601-25481861:-
Coord C1 exon
chr17:25481596-25481861
Coord A exon
chr17:25480765-25481595
Coord C2 exon
chr17:25480601-25480764
Length
831 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
GGTCTTTCTTTCACCTACAGTAA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGATGTTGCTGACCCCAACAAGGTCAGAGTACAGCTCCGTAAGCAGTACCTCTATTACCATGACCACCTGATGAATGTGAGCCAGATCATCACACACCCCGACTTCTACATCGTCCAGGATGGGGCAGACATTGCCCTGCTGAAACTCACAAACCCTGTGAACATTTCTGACTATGTCCACCCTGTCCCCCTACCTCCTGCCTCAGAGACCTTCCCCTCAGGAACGTTGTGCTGGGTGACAGGCTGGGGTAACATCGACAATGGTG
Seq A exon
GTATGTAGTAGAGACAACTGAGGTTAGACAGGTGAGGGAGCGGCCACGCCCATCCACAGCACAGGGCTTCCCTCCAACTTTGTAGGATGGAAAGCTGAAGACCTCGGAAGTGGAAAGGCATCAGGACATCAGGGATTTCAGGGTCCATAAGCCAGGATACCCCAGGGTAGCTACCATAAGTCATTCGACCCCTCTAATCTCAGACACTTCATGTCTGAAGGGACCACAGTATGCTTGTATTTCGGAGATTTGATTGAGAAAGAGTCCGATCACACTTACCAACAATGTCTCCAGCAGCACTTCATGGGCTGTGGTATTGTGTGGGGCTAGATTGCTCCCTTGGGAGCCTCCAGCACCAGTTTGCCTTCTCCCTAGTGGTCTTACTTCATTTCTTTTGACAACTCAGAGTAGAGCTTTAGGGATAGGGCCATGAGCAGGCAGACCCTGGCTGCAGACCACAGGAAGGATCCAGTCTCTCTGTACACAGAGGTGGGGCAGGAGAATAGTGTCCAACCAGGGCTCCACTGGAATCCTCTATCCAGCCTAGGCCAGAGCCAGCGGTGCTGAGGGAGATAACTGCCTCTGCCCCTGCCCGTCACTGACCAGATGGCCCACTAAAGACCCTCTGGGCTGTCCTCCTTCTCTGAATAAGGTCGGAAATCCAGGTCCAGCCTGGAGGAAGAAGCCAGGTTGGCAGAGCTGAATGCCATGGGCCGGACTCAAAGAGGGACTTGTGAGCAGAACTATCCTCAGAGAACGGGGTTAGCTGAGCCCATCCCAGCTTGCCAACCTGAGACTCTGCCCACAAAATGGTCTTTCTTTCACCTACAG
Seq C2 exon
TAAACCTGCCGCCACCATTTCCTTTGAAGGAGGTGCAAGTTCCCATTATAGAAAACCACCTTTGTGACTTGAAGTATCACAAAGGTCTCATCACAGGTGACAATGTCCACATTGTCCGAGATGACATGCTGTGTGCTGGGAATGAAGGACATGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024173-Tpsab1:NM_031187:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACACACCCCGACTTCT
R:
TGGCAGGAGTCATGTCCTTCA
Band lengths:
343-1174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: