RnoINT0155082 @ rn6
Intron Retention
Gene
ENSRNOG00000018611 | Tpsb2
Description
tryptase beta 2 [Source:RGD Symbol;Acc:3065]
Coordinates
chr10:14723812-14724600:+
Coord C1 exon
chr10:14723812-14723975
Coord A exon
chr10:14723976-14724051
Coord C2 exon
chr10:14724052-14724600
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACTGACCCTGTCTCCCCCAGGGA
3' ss Score
10.61
Exon sequences
Seq C1 exon
AGCCTCTCCTGCCACCTTATCCTCTGAAGCAAGTGAAGGTCCCCATTGTGGAAAACAGCCTGTGTGATCGGAAGTACCACACTGGCCTCTACACAGGAGATGATGTTCCCATTGTCCAGGATGGCATGCTGTGTGCTGGAAATACCAGGAGCGACTCCTGCCAG
Seq A exon
GTGGGTCCTGTGTCCCCTCTGCACCCCACCCCTTCTGGTCTCCATATGGTGTGCTGACTGACCCTGTCTCCCCCAG
Seq C2 exon
GGAGACTCAGGGGGCCCACTGGTCTGCAAAGTGAAGGGTACCTGGCTGCAAGCAGGAGTGGTCAGCTGGGGCGAGGGCTGCGCAGAGGCCAATCGTCCTGGCATTTACACCCGGGTGACGTACTACCTGGACTGGATTCACCGCTATGTCCCTCAGCGTTCCTGAGACCCATCCAGGGTCAGGGAAGAACCAGGCACCTGCTGTCTTTAACTCACTGCTTCCTGGCCAGATGGAACCCTGGCCTTCTTTGTACTCTGTCTCCCCTGTCTTCCGGGTGTCCCTCTGAGCCCCCACTTTGTTCCACCTTGAGTCCCTCGCCACTCCTGTCCCCTCTGCCTCCCACCACACACAGCTGCACTGTGCGGCTCCCTCTTTTCTGTGGCTCATTAAAGTATGTGAAAATTTTGCTCCAAGAGTTCAAGGTCATCCTTGTCTATGTATTGAGTTTGAGGCCAGTCTGGGATATGTGAGACACTATCCCAAGACCATAAAAATAAAAAATAAGTTCATGCAGTGGCACATCTGGCTGCTCTGGTCACCCAGTGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018611:ENSRNOT00000025220:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCAGGATGGCATGCTG
R:
GTAGTACGTCACCCGGGTGTA
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]