RnoINT0155115 @ rn6
Intron Retention
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74593219-74601142:-
Coord C1 exon
chr16:74601054-74601142
Coord A exon
chr16:74593281-74601053
Coord C2 exon
chr16:74593219-74593280
Length
7773 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGGCCTTCTTTTCTTTTTAGGGA
3' ss Score
11.63
Exon sequences
Seq C1 exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATGATTGGATGGCCCAAGATCCTGAAAATGTTGTAGCAATTCACTGTAAGGGAGGAAAAG
Seq A exon
GTAATGCCCCTGTTTTCTTTCATTTTCCATTTTGTTAAGAAATTGGAAAAATATACTGATGTGTGTGAACAAAAGTGATTAAGCAATATGAATCATTAACACTTGAAAATACTAGTTTCAACACTAAGGAATGTAAGGAGGAAGGAGGGAGACGGCAGAGGGGAGGAAAGAACTGGAGAGTGAGGAAGGCAAGAAGGAAAAGGAGTTAAGGAAGGTTGGGAACATTTTCCCCTGCCTACTAAATTGAATTATTTTGCTTTTGACTTGCTAATGTAATTCTGTTAAAATACCAATGGCATTTATCTTTGAAATGGAATAACACTTTTTATTTCAAGGTTATTTTTTAATTGGCAAAGACTTACATATTTATGATATGCATTATATTTTTGTTGTTACATTGTGGAGTAGCCTGATTCAACTAAATCTTATATGTATCGCCTTATCATACTTAATTTATACATATGTATCTCCTTCTCATACTTACTGTGGTTAATATGGTTTTCCCGATGGCCGGGATGTTGAGTATGTTTATATACCTGTTGGCCTTCTGCATGTTTTCTTTTGAAAGTACCTTTTGACCACTATTTTTCTGCTCTTTTTATTGTCATTGCTGTTATTTGTTTGGAGAGAGGTTTTTGCTTGGTTGGTTTGGGGATTTGTTTGTTTGTTTGATTGTTTCTTTTCCTTGAGACAAAGTTTTGATAAGTAGCACAGCCAATCCTTGAACTGGCTGGTATCCCAGGCAGGCCTCCGACTCATGATGCTCCTGTTCCCTTCCAAATGCTGTGACTACGGGTATGGCTGACTACTATATTTGGCACTGGCTTCTCTTTAGAAAGGAGCTACTCATATTGAAGTTTTATATAACATATTCTAATAGTGGCTCCCGTCCTGCATCTGCCCCAGATCCTCCCCACCACTACACCTACCCCACACTATGCCTTCTGTCTCTCTTTTAAAAAAAAAGGTAGATTTTTAAACATCAGAATTTAGTAAAAAACAATAAAAAAGAACAACAACCACATAATATATATATATACATGTATATGTATATATATATGTGTGTATATATGTATATATATATATATATATATGACAAGTAAGATAAAAATGGTCAAATGAAGCCATATAAGACAGAAAAAGAAAATCAGTAGAAACACCATTGAGTTCATTTTGTGTTGGCCTTCTACTGCTGAGCGTGGGGTCTGCCCTTGAGCATTGTTTGTATACCCAGCGAGACACTAATTTGTCTTTCTCCGTCTGGGAAGCCTCATTTGGAATGATTGCTTCCAGCTTCCTTCACTTACCTGTTAATCCCTTAATTCTGTTTTTCTTAATAGATGAATAATATTCCATTATTCAAAGGTACCACATTTTCATTAGGCACTCACCAGTGGATGGACGTCTAGGCTGTTTTCATTGCCTGACCATTGTGAAGAGAACAGCAATGAACATTAACGAGTGGGTATCACTAAAGTAGGGTGTGGAGTCCTTTGGGTTGATGTTCAAGAATGATGCAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAACGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGACCCAAAAAAAAAAAAAAAAAAAAAAAAGAATGATGCAGTTGGATCACCTATTTCTAGAGTTTTGATCAACCTCCTTTTGAGTTGCCATAGTAGCTTTACCTGTTCACACTGCCTCAACTGTGAATAGCTATTTATTTCCCCTTTCTTACAGCCACATCAATGTTTGTTGTCTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTTGTCTTCTTTTTTTTAAAGTCTTAGCCATTCTGACTTGAGTTAAGATGAAATCTCAAAGCAAGTTTCATTTGTACTTACCTAACAGCTAAGAAGATTGGACATTAAAAAAAAAAAAAACATTTTTTGGCCATTCATATTTTATCTTTTAAGAACTCCCTCCTCTGTCTCATGCCCCAATTTGAAGAACAGGCTCCCTCTTTGAAATCTTTGCCCAGTGACGCCCCATACATACCCAAACATTATAGGAAATTGCCAATGCTCTCTGATCATGCTCCAGAACATGACAGTAAGACCATGTTGCTGACAACATGCATGAGTCATATACATGGAGAGATCAAGCTGATACTCACCTGGAAGCTTCGTCCCTACGCTCATAGTGCTGGAGTATGCTATCCTTGCTGCCATAGGAGGAAAGTCGACATCATTCTTATCGTTTTGTGAACCCCGAGACGTACAGTAATGGTCAGCTGTCAAGGCGTGCTTACTGCTGGAATGGGAGTCATCAATCCCTTTTCAGTGAGATTTAAGGTCCATTCCACAAGTTGAAACTCATACCCGATACTATAATTAGTCAGATTCTGAGAAAAAATTGTCCACTGTAAGAGAGACACAGTATTCAGACAACTCCTAATGCGTTGTTGCCATACGCATCAGTTAGGGTATCTCTCAACCCTTATCAGAGAAGCTTCTATTTTCTATAGATGGTGACTGATATAGAGACCACAACTAGTCAAGGTATAAAGAATGAAAGGCTACAGAAAGTTCCGTCCTGAATAGATCATCGATATCACATTCCCTCTTCCCAAGGCTCAGGGGTCACTGTGGAAAGTTGGGAGGAAGATTCTATGAATCAGAGGTAGTGGATGGCTAGAAAGAAACAGTTATTTTCCTGACAAAGAAGGCCACTTGTCTATATAAACTCCCAGCAGTTGTGACAGTTTACACTAGACAACATCACACTATAGAGATGGGAGGTAGGCATAAAGTCCCACCCGTAACTAAGGAACTATTGCAACCCACAGCTTCTTAGAGAGGAGAGTCAGTCTTCTAAGAGGTATGTCCCCTGGCAGGCTACCCAATCAAGAGTATGTGGGCAGCACAAACTATATGTTATGGCTTTTCTTTTTTCTTTTTGAAGTTTTATTTTAATTATGCATCTCCTTTCCCTGTACTACCTACAAGCTTTTCCATACGCCCCTTTCCACTCCTTCAAATTCATGGTCTCTTTTTAATCTATTGTTATTGCGTGAATGTATGATATATATTCTTTGTGTAGAGCTGAGGATTGTGGGCTTTTTTTCTGTCCAGTTTGACATGCCCATTGGTGTCCTCCTTGTTCAGCTCACATTTGGGCGGTAATGTTTATGGGTGTAGCTTCTGATGTCACTAGAAGACACACTCTCACAGCTAACTCCTTGTTCCTCTGACTCTTACCATCTTTATGCCCTCTCCTCTGCAATGCTCCCTGAGCCTGGGGTGTGGGAGTATTTTGTAGATGTGTCCATTGTGACTAGGCTCCATAACTCTGCATTTTGATTGGCTATGGGTTTCTGTGGTGGTTTCTGCTGCAGAATCCTATATTGTATTTTTTAAATAAAATCATTTGAGAAATTTTAAAAAAGAGGAGTTGGGGAAATAGCTCAATCAGCAAAGTGCTTACATGTAAACCCAATGACCTGAGCTCTGATCTCCAGAACACATGTAAAATCCAGCACTGTCTGTAACCAGCATGTGCTGGGATAGAGACAGATGTCTGGGGCTTCCCAATATGCCAGTGTATCTAATCAGTGAGCTTCAGGGCCATTAAATCCTTACCTCAGCACTAAGGTGGAGAGCAACAGAGAATGACATTCTCTCTCCCCAACATGCACAAATACACACAGGTGACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCTCTCCAAAAATTTTTTCTAGGACTTTAATCCCATCCCAACTTGCACAAGTGCCTAGTTGGTAAAGATAAATTAATCAGTACTGAAAAGAAAAAAGTCTCCAGGACTTTCTTAGTCTCAGGGGAGAGCTAGCTTGTATTTATTTACCCTGTGCCCACTGACTGGTGATGGGCTGGCCAGAAGCACTGACACTGTTCAGGGGGTGAGAAAGCAAAGCCTAAGGTGGAGGAAGCCGACCCCTGACTCCCAGTTGCTGCTGGAAGCCACACAGAGGAATCAGGAACAGAGGGTCAGGGGTCCACAGGCCTGAGAGGAGTAGCCTGGGGACAGGGGTTCCCCAACTCCTGGACATTCAGATGCTGCTTGGTAGCTGTGAATTGGGAACAGAGTTGGTTCCCTGGGCAGAGGAACCTGGGGCAGGGGATGGGGAACTCTGGCTTAGCTCATCATCAATTGTCCTTAGCTTAGCATCGATATTCTGGGAGCTCTGACGGGCCTTCTGCAGAAGACTTAGATGGCACAGCTCTGTAGACAGAAGCTTTCTCTATGCTCCCCACAGTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCCCACAGTGGTTCTTAATAAGAGTCCTTGGTTCCAAACTGTTTAGTGATTGGGAACCCCAGCTTCACATACCTTTTTTAAAAAAATTGGATATTTTATTTATTTACATTTCAAATGTTATCCCCTTACCCAGTTTCCCCTCTGGAAAACCCCCTATCCCATTCCTGCTTCTATAATGGTACTCCCCCACCCATCTATCCACCCCTGCCTGCCTGCTCTGGCATTCCTATACACTGGAGCATCGAGCCTTCAAGGGGCCAAGAGCCTCTCTTCCCATTGATGCCCAACAAGGCCATATGGAACCATTTGCCTAAGAATTTCCTGAAGTCATTGTTTTTAATAGCTGAGTAGTACTCCATTCTGTAAATGTTCCATGTTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTGTTTCCAGTTTTTGGCTATTATAAATAAGGCTCCTATGAACATAGTGGAGCACGTGTCCTTGTTATATGTTGGAGCGTGTTTTGGGTATATGCCCAGGAGTGGTACAGCTGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGAAACTGCCAGACTGATTTCCAGAGTGGATGTACCAGCCTATAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCCCAACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTATTCATTCTCACTGGTATGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGACTAAGGATGATGAACATTTCTTTAGGTGTTTCTCAGCCATTACGTATTCCTCAGCTGTGAATTCTTTGTTTAGCTCTGTATCCCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCTAACTTGTGAACCCACACACCTGTGATCACTTGATTTTTGACAAAGAAGCTAAAACCATCCAGTGGAAAAAGGACAGCATTTTCAACAAATGGTGCTGGTTCAACTGGTGGTCAGCATGTAGAAGAATGAAAATCAATCCATTCCTATCTCTTGATACAAAGCTCAAGTCCAAGTGGATCTAGGACCTCCACATAAAACCAGATACACTGAAAGTAACAGAAGAGAAAGTGGGGAAAAGCCTCAAACACATGGGCACTGGGGAAAACTCCTGAACCGAACACCAATGGCTTATGCTCTAAGATCAAGAATAGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTATGGCAAAGGACACTGTCAATAGGACAAAATGGCAACCACCAGATTGAGAAAACATCTTTATCAATCCTACATCTGATAGAGGGCCTCTCACATCTTAGGATCTGTTTTCCCACCCCTGAGTGGTATATAAGGGCTTTCCTCACGCCCATCATCAGACATTTGGCATAGGGTAAATGCAGTCTAGTGTTCTGTGATTTCTGGAGTTCCCACAACCCAGCAGCAAGACAGAACACAGGACCAAGCATCTGTGCAGCATTTTGCCTGCCTAAGTGGCTTTGAAGTTCCCATACCCCAACTGGGGTGGGGGTGGGGTGCAAAAAGCAGAACCACAATTAACTCTTTGTGAACCAAAGAGAAAAGAAGAAGAAAATGTTTTACACAGTTTACTTGCATAGACACACACACATACACACTCATATACAGTCTGGTTGGGCCTGAACACCTCTGTCTTATCACCTCCACAGGTGTTTATGTATACTCACATACATACACATATACCTACGTATGTATGTATGTATGTATGTATGTATGTATATGCATTCTTATAGACAAAAGATATATACATATATACATTTGGTGGGTGGAGCAAAAGCTCCAACAAGCAAGTTCCAACAGAGAAAAAAATTCACTCATTCTAGATGAAAAAGAAAAAGAAGATCCAACCTTTATTGCTGATAGAAAGACAAAGATTTTATCTTTTTTTTTGCTGAAAGTAAGGAAAACTTCTCCCTTATTGTCATTCTTAGTTCTTATACTTTCTCAGGAGAAGTGATCGCATACATCTTTATATTCCATAATTGCATAGCAGAAATGTTTTCATGGGTTTCCATTAAGACAAGTAACTAACATTCATTTTCTTTTACTAGCTTTATAAGTTCATTAAAAGTTTAAAATAATATTTTTATGCTGCAATTAGCAGATGTTTACAAGAGGCAAATGTGTCTTGTGTTTCATTAATATTGAAGTTTTGTATAGATAAAATAGTATTATATTTTCTGTCCTTGCAGCTACAAGAAATTTTCCATTCCCAGTTTATGACCTTTAGTTACCAGATAGTGGTCTCACAGCTAATCTAGAAGGAATGTTTTCCCTGATCATAAATTTGTTCCAAGCCTGCTTTCTTATCCTAGTACAGTTAGCTCATGACACATGAAGGTTCACAGAACGCTATTTGCAGGTTTTCAGAGGGCTGGAAATTACTTGTAGAAATGTAGGAATTCTATAAAATCATTATCAGGAATTATGAAATCATCAACTTATCTGCATAGCATTACTAAATGATAGTACATGTTCATTTATCTGCAGAAAATCTGCCCAGTAGGCTGGGCTCATTCCCAGGAATTAGCAGAAATGTTTACTTGTGTTTCATGCAAAGCAGTGGCCATTTCCAGAAAACTTATTTGAATGCCTTTAGTCTTTCCTAGATGGCTCCTGAACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAACATATGCGTGTATGTGTATATATGTGTGTGAGTGTGAGTGTGTGTGTGAGTGTGAATGTCTTGTGTGAGTGCATGTGTGTGTGTGTGTGTGTGGTTTGAGTGCATGGTGTGTGAGTGTGTATATAAGTATGTATTTATATGTATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGCAAGCATGTGTGTGTTCTATGGTTTGAATAGGTTTTCAGTTATACAACAAGTGCCTTTACCCACTAAGCCATCTTGCTGGTCCCCCACCTTATTTTTTTGAGACACAATCTATCACTAAACTGAGAACTAAATGTCTTGGATAACAATCTCTTGGATCCTGATTCCAGTGCTGGGGTCAAGGTTCATAGTGTTACCACAGCTTTTCACTTGACTTTTAGGATCTAAATTCATGCCCTGAGGCTTTTTGCCAATCAAGAAATAAATCATCTCCACAGGTCTCTGAGTTCTTAAATTGAGCACTACTGTGAACAATGATTCTTTAAATGGCCTTCTTTTCTTTTTAG
Seq C2 exon
GGAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTCCTAAACGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837:ENSRNOT00000034670:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(24.2=100)
A:
NA
C2:
PF0078215=DSPc=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]