RnoINT0156967 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7251556-7254188:+
Coord C1 exon
chr3:7251556-7251674
Coord A exon
chr3:7251675-7254118
Coord C2 exon
chr3:7254119-7254188
Length
2444 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCACTGTCTTCCATTTCAGGAA
3' ss Score
12.77
Exon sequences
Seq C1 exon
GTGGAAAAGGAACTCCTTCAGGAACCCCAGCGACCTCTCCTCCCCCAGCCCCGCCTTGTCCCCAAGACGACTGTGCGCACGGTCCAGCCTCCCAGGCCTCAGCCACACCCCCCAGGAAG
Seq A exon
GTGAGCTCCAGGCCTGAGATGCCAGTACACCCACACCTCACTTTGTGAAGCCAGGTACAGTCTTGGTCCAGATGGATGGAGTGGAATCATAATAATGGAAAAGTAGATGCCACCAGTTCTCATGATAGAGCTGCCAATCCCAGGATCCAGTGGATTAGACCAGCTTTCAAGTCAGCGTGGACCGCTGGGTGCCTTCTCATGTGTGCCCTTCTCATGGCCTTGACTGTTCAGACAGTAGTAAGATACCCTTAGCATAGATCAAGTTACAGACCAGACTCTCAAGGTATTGTATCTTCCCTAACATGGTTTTTAGCTTAGAAATAGAAGGGGGAGATGAGAAGCATGATTCTACAGGAAAAAGAAATGGTGAGGTGTCATTAAATCTGGACCTTGAAATTATGTACACGCCCACAGGGAATGTAGCTAGTATCATGGCACTTGTTTAATCCAGGCTCCAGAGGTGAAGGCAGGAGGATTATGAATTCAAGGCCAGTCTAGAAGCAGTGAGACCTTGTCTCAAAAGGACAAGCAAATGAACAAAATAAACTCAAACGTGATTTATCGCACACTGCAGGGTGAGGTGAGTCCTCTTGTTGCTGTTGGAGTGGGAGCTAAACTCGCTGCTTTTTTCCTATACAACTTGATTTATCTGAAAGACAACTGACTGGTTTATTCCGGCCTGAATATTTGGCAGGAACTTTCCTTTTAATTGATTGTTTTCAAACTCAGTACAAGCTAATGGATTTTGTTATAACATTTTCATTCTTATATGCACTTTGCTTATGTTTTCTTCTTCTACCTATGACAGTTTCTTAAAGGATAAACCAAGTCTGTCACTTCAAGGTAAACAGCTGACAATATCTAAAGTCAATTTTAAAATGCAACCTTGCAAGGAAAAATAGGTCATTAAAAAACTTGTGCCTATTTGAAGCCAACCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGACTACACAGAGAAACTCTGTTTCAAAACAAACAAAACAAAACAAAACAAAAAACCCTAAAATATCTTGTGCCTCTATGTCTGTGGCTGTCATGATGGCACAAGCCTTTAGCTGCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTCCAAGTACAGAGTGAGTTTGAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCAAAATAAACAAGCAACCAAACCAAGCCAACAAGAAAAGTGTTGCGCTTGCATCAGTGCTAATTGTGTAGGCATTGAAGATCCAAGCCAGGTTTCAGTACCCATGCCAAAGCCACATGTTTGAGCAGGCTGTGTCCCCCAGCCCTGCCGTTGGAGGTCGGGGGTACCTCCGTCTCAGGTAGATGCTGGCTCCATCTAAATTCCAGGTTAAGTGACAGGCCCAGGCTCCAGAAGGCATCAGAGAGTGATAACGTGGGATTCTGACCTCTGAACCCTGTTCATACCACACAAAAAACAAATCAATACACAGTAGGAAGAATGTGTGTTTTCAGGTTCCACACTAGAGCTATGATTAGAAACCGTAAGATGTAATATACATTTTACTGTTAAATATCTGTAAAGACCCTGATTTTCTTACATTTCAGCCAAAGTAACACATTAAAGTATATTGAGAGTAAAATGTAGGCACATTCAACTGGTTTTCATTAATTAAAATTATTAAAAGAGAGTGTAAAAATGTGGCAATTTTAAGTATTGTTTTAGAAAATGCATTTTTTTCCATAAAAGTATGCTATACACATTAACATGACATAGTTGTATTTTTAAGTTAATAAGTTCTCTTTAATTTATGTTTCAATTTTATATGAAACATTTTTGGTAAATTTAGCCATAAAATAGAAGCATATATATATATTATACAGTATATATATATATATATATATATATATATATATATATATATATATATATAGTATTTATTTTATGTGTATGAGTATTTGTGCCTGGTGCCCACAGAAGCCAGAGGAAAGCATCAGATACTTTGTGTAACTCGGGGATTGGAGTTATAGATGGCTGTGAGTTGTCATGTGGGTCCTAGGAGTCAAACCTAGGTCCTCAGGAAGAACAGCCAGTACTCTTTTTTAATGGTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAGCCCAGTCAGTACTCTTAACCCTGAGCTGTTTTCAGCATGGGCCTGGCACACCAAAGCAAGCCCTTACCCCCATAGACCCACCCTCTGGCAGTGCTGATGCCAGTCCTGCTTGGGACAGGGATCACTAAGGATCTTTTTTAAGATTCTAAAGGGATCCTGGAGTCCAGCAGTTCACTAAGCTAACCTTTAGATTCCTTTAAATTCCGTGTGCCACAGAATATGCCCAGCGTTTTCACTGTCTTCCATTTCAG
Seq C2 exon
GAAGAAAGAGCAGATTCTTCAAGGCCTTACCTACCCAGACAGCAGGATGTTCCGAGTGACCGCGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.4=100)
A:
NA
C2:
PF043887=Hamartin=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]