RnoINT0156969 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7254609-7255531:+
Coord C1 exon
chr3:7254609-7254713
Coord A exon
chr3:7254714-7254972
Coord C2 exon
chr3:7254973-7255531
Length
259 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTCCCCACTCTCCCTTCAGCTG
3' ss Score
12.45
Exon sequences
Seq C1 exon
AGGATCTACCTGGAAGCAAAGGTTCCGTCACTCTGAGGAATCTACCAGATTTCCTAGGTGACCTGGCTTCAGAGGAAGACAGTATAGAGAAAGATAAGGAAGAAG
Seq A exon
GTAACATCCCTGGGTGGCTACAAGGTGATGAAGTGTCCTTCTGTCTCAGGCCTGGGCTCTAGAGTCATAACTCAGGCTCGATTGACTTTTCTGCGTTGGGGTGAAAGGTGGTGTTGGTTCCAGCATGTACAGGAAAAGGAAATACAGGAATACAGGAAACATGTATTGCCAGCATACAATCCCTGTAGTACACAAACCCAAGCCCACTTGCCTGGCCGAGTGTTTACAGGGTTCCCTTGTTTCCCCACTCTCCCTTCAG
Seq C2 exon
CTGCGATATCTAAAGAGCTTTCTGAGATCACCACTGCAGAGGCGGATCCTGTAGCTCCTCGAGGGGGCTTTGACTCTCCCTTCTACCGAGACAGTCTCTCTGGTTCTCAGCGGAAGACTCACTCAGCAGCCTCTGGGACTCAGGGCTTCAGCGTGAACCCTGAGCCTTTGCACTCCTCCCTGGACAAACATGGGCCTGACACACCAAAGCAAGCCTTTACTCCCATAGACCCACCCTCTGGCAGTGCTGATGCCAGTCCCGCTGGGGACAGGGATCGCCAGACTTCTCTGGAGACCAGTATCCTCACTCCCAGCCCTTGCAAAATTCCACCTCAGAGGGGAGTGAGCTTTGGAAGTGGGCAGCTTCCCCCATATGATCATCTCTTTGAGGTGGCCTTGCCAAAGACTGCCTGTCACTTTGTCAGCAAAAAGACTGAAGAGCTGTTGAAGAAAGCGAAAGGAAACCCTGAGGAAGACTGTGTGCCCTCTACCTCCCCAATGGAAGTACTGGACAGACTGCTAGAGCAGGGAGCAGGGGCACACAGCAAGGAACTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(4.9=100)
A:
NA
C2:
PF043887=Hamartin=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGACCTGGCTTCAGA
R:
CAGAGGGTGGGTCTATGGGAG
Band lengths:
293-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]