RnoINT0156971 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7256970-7257893:+
Coord C1 exon
chr3:7256970-7257013
Coord A exon
chr3:7257014-7257726
Coord C2 exon
chr3:7257727-7257893
Length
713 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TCCCTCTGCTTTACAATCAGGCT
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTTGTCCTTGCCCAGCAAGTCTGTTGACTGGACCCACTTTGGAG
Seq A exon
GTAAACGCTGCTTCGGTTCACATCCAGACCCACTCACCCCTTCTCTGTCCTGGGGGTGCCCTTAGGAAGGGACCTCCTCTGGCTCCTTCCCAGTCAGCTTCTCTGCTTGCTGAGAGAACCCCAAGCCTTGCAGTCAGCATTTGGTGTTTTTAGGGAGTGGCAGGTGTGATCTTAGGAGTTTAGTGAAAAAGTGAGCCCCAGGTTTCCCTCAAGAAGATCAACTTGGTGGGAATGTGCTAGGAAATCTCCCTGGGAAGCCCAGCACTGAGGGACAGTGGCAGAGAGAAAGGAGGTCAGATGTATCTCCAGGACCAGGCTCCAGCCTCAGAAGCCTCTCTCCATACCACTTGTGGGTGCTTTAAAGGGAAGGAAAGTAGATTTCCCCATTTCCCAGGAATGGTGGTGCTAGGAACTAGCAGACTAATTGGGAAGTGTTGGAATTGTGTGTACATGTGCGTGGAGACAGGGTCTCTCACTCGACTGGAGCTTGCCAGTGTAGCAAGGGTAGCAGGCTAGCAAGCCCCAAGGGTGCTGTCTCTTTTTATATGGGTTTTGGAGGTCAAACCAGGCCCCCAATGCTTGCACAGCGCTTCGTGGTCTGAGCTGTCTTCCAAGACCCTGAGAATTGTCTCTTAAGTGAGGCACATGGGAGGGCCTTGATGGAACTATGTGTAAAAGGCCTATCTGCCACCTTCCCTCTGCTTTACAATCAG
Seq C2 exon
GCTCTCCCCCCTCAGATGAGATCCGGACCCTCCGAGACCAGTTGCTCTTACTGCACAATCAGCTGCTGTACGAACGCTTTAAGCGGCAGCAGCATGCACTGAGGAACAGAAGGCTGCTGCGCAAGGTGATCCGAGCTGCGGCCCTGGAGGAGCACAACGCAGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.1=100)
A:
NA
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCCTTGCCCAGCAA
R:
CTGCGTTGTGCTCCTCCAG
Band lengths:
206-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]