RnoINT0156972 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7257727-7259165:+
Coord C1 exon
chr3:7257727-7257893
Coord A exon
chr3:7257894-7258982
Coord C2 exon
chr3:7258983-7259165
Length
1089 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
AGTGTTTCTGCCTTTGCTAGAAA
3' ss Score
5.73
Exon sequences
Seq C1 exon
GCTCTCCCCCCTCAGATGAGATCCGGACCCTCCGAGACCAGTTGCTCTTACTGCACAATCAGCTGCTGTACGAACGCTTTAAGCGGCAGCAGCATGCACTGAGGAACAGAAGGCTGCTGCGCAAGGTGATCCGAGCTGCGGCCCTGGAGGAGCACAACGCAGCGATG
Seq A exon
GTGAGCAGCCAGGGCGAGCCCACCCATCCACTGCTCTGTGGGAGCAGCTGCAGAGTTGGGGGTGTCGTGGGGGTCCCAGCTCTGCCCTGAGTGGCCAAGGGCAGGCCACTTAGCTGTGAGTTACAGGGGTACATGGCTAATTCTCCCACACTCTCAAGAACCACAAGAACAAATGCCTTTGTGACTGCGTGGCATTCATGTAAAGGGCCAAAGGAGTTTGTTTCATGGCGCAGAACTGAAGATGTTTGATGCCATGGATTTAAAGCCAACCAGATATGGACTTTGAGTGTTGGTTTTTACCTTAAGCCTTTGATATTTTTGTTGGGGGGGTTGTTTGTTTGTTTGTTGTTTGAGGCAGGGTCTCTCTATAGAGCCCTGGGACAGGAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACCTAGACCTGCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCCCAAGCGCTGGGATTTAAGGTGCGCACCACAGCAGGGGTCTCACGTTCAGCCTTTGATGCTCTTCTCACGTTCCGTAGATAATAAGAGTTAGTGGCATTCTGTGTGTAGCCTGTGGTGTTAACTCATACCAGTGAGCATTTGCTCTAGCTGGCACACTGAGTCAGGGCCCAGCATTTCAGAGGATACACACTGTGTATTCAAGGTCCTCCTCAGTAGGCATCTAGGACTTCAGCAAGTGTCAGAAGTTCCTTGAAAAAGGTTCCATGTGCTGATGTGAGTTTAGAAAAAAATTTGACAGTAGAGAGGCACCAGACCCATTAAGTATATGATTAGCATTCAGAGCAGTGTGTAGCTGTCAATGTTGGTGACATGTGTTAAGCTTGAGTGTCACTGCCCATGTTGGGTAACAGCTAAAATAGTAGTGTTTCTGCCTTTGCTAG
Seq C2 exon
AAAGATCAGTTGAAGTTACAAGAGAAGGACATCCAGATGTGGAAGGTGAGTCTGCAGAAAGAACAAGCCCGATACAGTCAGCTTCAGCAACAACGTGACACCATGGTGACCCAGCTGCATAGCCAAATCAGACAGCTGCAGCATGACCGAGAAGAATTCTACAACCAGAGTCAGGAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PD(5.3=67.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCAGATGAGATCCGGAC
R:
TGTAACTCCTGACTCTGGTTGT
Band lengths:
342-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]