RnoINT0156973 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7258983-7260250:+
Coord C1 exon
chr3:7258983-7259165
Coord A exon
chr3:7259166-7260139
Coord C2 exon
chr3:7260140-7260250
Length
974 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CGGCCGCTGGTGTTTGGCAGACG
3' ss Score
5.8
Exon sequences
Seq C1 exon
AAAGATCAGTTGAAGTTACAAGAGAAGGACATCCAGATGTGGAAGGTGAGTCTGCAGAAAGAACAAGCCCGATACAGTCAGCTTCAGCAACAACGTGACACCATGGTGACCCAGCTGCATAGCCAAATCAGACAGCTGCAGCATGACCGAGAAGAATTCTACAACCAGAGTCAGGAGTTACAG
Seq A exon
GTACTGGCTGCTATACCCGGCGGGTGGCAGAAGGCATGGTGTCAGCCGTGTCTTCTTACCTCACTCTGAATTCTTCGCTCTGAAGTGGCAAGTGTCTTGCTTGTGGGGTGGATCTAACTGAGGGCAGAGGTCCCCAGCTCTCTCCGTTCAGTGTTCCCTTGGGGTCCCCAGCACCCTGAAGCCAAAAGAAGCAACTTAGTGGTCCTAAAGCCAGTGCTTCTCAGCCTGTGGTCACCGCCACAGGGGAAGCACACATTTTATGGCCTTTGGAATAGACATACCACTCAGTCGAAAATTACAGCTGAGGAATAGCAGTGGAAACAAGTTTATGATTGGGTTTCCCCTGACAACCCGACAGAGATCAGGACCACACACTGAGCACCTCTGCTCTAAGCAGATCTGAATGGGGTTGAGTCCTCTTGGCATAGTGGCTGTTGAGAAACAACACACCTACATTAAAAATACTTTAGCCTTCACTTTTAAATGGCCATGGTTGTCAGGTGACCCTGGTGTCAGCACAGTGCTTTGGCTTCAGAATCAGCAGACAGTGATGCCTTCATTTCCTCCTTCACTCTGTTTTCTCATATTGCTTTTTTAGCACATAGATAATACCAGGAAGTGATGTTATCCACACCTGTGTAGCACTGTCTCTACCACTGAATCAGTAGTTCCCTCGATGTCCCACAGATGTTGCTATAGTCCCCTCAGAAGAGTGAAAGTCTGGGCCACTTTCTGTGTTGTCGCATGGTCTAGGACATGCAGTTTTGGAACTGTAGGGATCAGGTCTTTGGGAATGTGCCCGCGCTCCCTTGCTCCCTCCCTCATTTTAAGTAGTAAGAGACTCTGACACTCTCCTTTAAAATTGGAAAGTCTGATACTGATGGGCAGAGCAGTCGAGGAGCAGAGCACCCACAGCTCTCCCGTGGCTGTGTCCGCTGTGCTCTGGTAACCGCTCGGCCGCTGGTGTTTGGCAG
Seq C2 exon
ACGAAGCTGGAGGACTGCAGAAGCATGATCGCGGAGCTTCGAGTGGAGCTGAAGAAGGCCAACAGCAAGGTGTGCCACACCGAGCTGCTGCTCAGCCAGGTCTCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATCAGTTGAAGTTACAAGAGAA
R:
CTTCTGAGAGACCTGGCTGAG
Band lengths:
294-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]