RnoINT0157506 @ rn6
Intron Retention
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11803999-11804632:-
Coord C1 exon
chr3:11804467-11804632
Coord A exon
chr3:11804142-11804466
Coord C2 exon
chr3:11803999-11804141
Length
325 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GGTTGCTCTCTTCCCGGCAGATG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCTATAAGGCACAACCCACAGAAGCCCCAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACATACTGGGGGCCCGCCAGGATGTTGCTACTGTGCTGCTCCTGAACCCCAACTATCCAAAG
Seq A exon
GTGGGCCCCTGCTGAACCAGAAAGACTCTTCTCCTGCCGCTTGTCTACCCCTCCTGTCCCCAAGAGACTGGTGACATTGAGTTACTACCCCTCCAGCCCTCCCCCAGACCAGTGCTACCTTCCTCAGACAGGCCCTACAATTCAGAAGCTAGTCCCTGTCCTGTCTGGATCTCCACTGGGCAATTGTCCATTCCTTATGGTCTCCTGCTCCTTCTGGGTTAAGAAGCCCTGGATGAGGGAGTCTACAGGGGCCTCCCATGTTCATCTGAGGTCAAGGTAGCACTGGCCTGCACTGTTCCAGCTCTGGTTGCTCTCTTCCCGGCAG
Seq C2 exon
ATGGCTGCAATGATGAACACCCTTTTTCCTGGCATGACTGTGGAGGGCGCCCTTAAGAGCCGAGTGGCTGAACTGGCTAGGCTCCAGCTAACCCGGATGATAGAAAACGGGCCAAGGAGAAACTACCCTCAAAGCATTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650:ENSRNOT00000071233:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(78.5=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCCAGACAGCAGAGGA
R:
TGCTTTGAGGGTAGTTTCTCCT
Band lengths:
302-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]