RnoINT0157907 @ rn6
Intron Retention
Gene
ENSRNOG00000039777 | Ttf1
Description
transcription termination factor 1 [Source:RGD Symbol;Acc:1565673]
Coordinates
chr3:7635933-7641072:+
Coord C1 exon
chr3:7635933-7636456
Coord A exon
chr3:7636457-7639791
Coord C2 exon
chr3:7639792-7641072
Length
3335 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGTTGTCACATTTTTCCCAGGAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
CAGTCAGAAGCCAGGGCGGTGAGCAGAGGCTGCGTGGGGCCGGAAGTAGGGATAGGTGATTTCCGCTCTTTAGTTGAAACTGAGCGCTCCTCGGGAACCCGCTGGGCTGTTTGGGAAGTCTGTGCCGAAGGGATAATGGGACCCAGTTATGGAGTCCGTAACGGTACCCTGTTAAAATGGCTTTTGCACCGAGGCTAGTCACCGGGCATAAAGGCATTGAGAGGTCTCTCGTAGGAAATCAAAACATTGTTCCAAGAAGAGAGGATGCCAGGAAATGCACAGCATGGGTCAGGCTATGTCATGAGGAACTGAAGGCCCTGGAAGTCTGAAAGGATGTTGATTTTATATAAAGGATAACAGACAAAAGAATTAAGGTTGAGCTGGCTCAGCAAGTAAAACTTGCACAAACATGAGGACCCGAGTTTGAACTCCTAGCTTCCCCACTTACACCCTTCTCCTGTGCATTTAGTGAGGATAAGTAAATAAGCTCTTCTGCATAAATCCCTCCAGTTCCTCAAGAGCGG
Seq A exon
GTAAGGGTGTGGAGAGATGATTCAGGGGTTAAGATCACTTGTTGCTTGTGTGGAAGACTTGGGCCTGGTTCCCAGCATCCAAATCTATATAGTAGTTCACACCCATCTATGACTTAAGTTCCAGGGACCTCCACGATCACCCAGCAGACATGCATTCATTTACACAACATATACTATTTTCAAATTAAAGGCAAGGTTCAGAAGGGGCAGTTGTAATTAATTTTACTGAAAGGGCCACAGACCATGGCAAAAATTCATTTGGGGCCAAAAAGAGCTCAACAGCTAAGGGGAAAAAAAAACCCAAAAAACAAAACCCCACTAAACAATAACAATGTGCTGTAACAATAAGGATGTGGAGGAAAATAGGGAAACCGCTCCTACTGATGGCTCCTGGAAGGGTCAGGAACTAGGGTAGCGCTGGGGACGGTGCTCAGTGAAGAGACTGTTGCTAGCATATCTATTTCCATTTTATGGGTTGGCTCTGCCCCATTTCAGGTGCTCATTAACCTCATCTGGCTACCCTAGGGGACACTCCGGATCTAAAGAAACAGAACTGGTTCTAGATAGTGTTTTGGTTCCAACCGTGATTAGAATACAGCCCATCTGCCCACTTGTGGGTTTTCCCTGTATTCTCAGCAGCACAGGCACAGCCAAAGAGAAATCGTTAATCCATGCCAAAAAAATGAAAATTACTAAGAGCAGAACCAGGTTCGGTGTTGGGGCCACAGTGATTGTGTAAGACTGTCTTAGATCCTTGGTAGCCATTGTGCACCCCTGCTGAGACCTTGAAAAGTCTTTGAAAGGGTCCCCTGCATCCCTAGGTAGCACGTCCCAGCTGGGAGATATTTATAAGGGAGGCAGGTCTAAAACAGCTCTGGTACCCCATGGAAGGGGAAGGACCTGCCTTGAAGGTGAAAGATTAAGTGTTCGTTCATGGCCTCTTACCTCTAAAGCACAGTCCTCACAGCTGCCATGCACTACCCAGGATGAGGTAGGTACCTTCTACAGGGAAGGTGCTTAGCATCTAGGTTGGCTAAAGCCTCTGGTGCTAGAGAGAGATTCAGTCTGTAAGGAAAACAGGAACTACAGGTCAGAACATACTGGGAAGAAATTCAAATATACTGGTTTTGGCTGGGTGCAGTAGTACATGCCTTTAAGGCTGTCTCCCAGGAGACAGAAACAGTTGGATACCTGTGAGTTCAGGCCTGCCTGGTCTACAGAGGGAGAGTTTTAGGACAGCCAGGGTCACACAGAAATTCTCTCTGGTTGTGGGGAATGTGCTGTTTTGAACCACATAAATATATCATCTAGTCAAGGATAAATTCTAAATATTTGGACCCAGAAGCAACTCAGATTGAGGAGAGGAATATGAAATGTTTGTATGTAATTCTTTATGCATGAGGGGGAGGGGCTGAGTCAGGGCCTCAGTCCTACAGTGTAGCTGAGAAGGCTCCTCCTGCCTCCACTCCTCAGTGCCAGGTTACAGGTATGTGCAACTGTAAATGTATGGAGTGTTCTTGTTTTGCTGGTCACTGACAAGGCACATCTGCCCTCTTTGTCAGGGCCCAGTGACCCTGCCTGAGGTCTGGGGCTATGTCGTGGTATCAAGATGTCGAGACTTGCCTGATTTTAATGTAGGGCTGGGCCAGGGCTTGCAGGCAATAGAAATGGAGCAGCACACACAGCTGCCTGCCTTTGTGGGCTCTGAGTGCCAACAGAGGAGCTAGACGTTGAGTGACTGAATGGCTGATTGCTAACTTTTAAGTTACAGTGCTTCAGAAAAGCACAGATTGCCACAGAGAATGCAGAAAGGAAGTGAAAACTATGATACTAGTGTTCTAGGATTTCATAGTATTTGTTTGATCAGATTCACCCCCACTACTTCCGCAGCTCCTAGATTCACCCCCACCTACTCCCCCTCCCCACAATTTTATGTCCTCTTTCTGTTTTAAAAATGACCTATTCAGTCAAGTTTGTGCCACCCTGTACTCTGGGTATGGGGCCAGCCTCTGGAGCCATGTCAACCTACCAGGGATAATACCTTAGAGAACACTGACTCTCTCTTCCCCAGGAGCCTCAGTTAGGAGTTGGAGCGCATTAGCCCAGCCCCTTCCCCTCCATGTTTGAATATTGACTGGCTTGATCTCGTACAGGCAACTCCGTACAGCTGCTATAAGGTATGAACACAGCGGCCCTAGCCTGTCCAGAAGACATGTTTTGCTCCAGTTCCCCCAGCCTCTGGCTCGTAAATTCTTTCCCCTTCTGAGACGGTCACTGAGCCTTGGAGGGTGGGCAGGGGATCCAGCTGTTCTTTTGTGGCTGAGCACTCCACTGACACTTGTTCCCTGTCCCTTGACTGGTTGTGAGTTTCTTCACCAATCAGTTGCTGTCCACTGCACAAAGAAGCTTGTGTGATGCAGCCCGAGAGCTGCCCCAGTCTGTGGTCCAGAGGACAAGTGTAGATATAGTTATGCCATGTCTGATTAGCACAACAACAGTGCCAGCTTCACCCTGGGGCTGGGAGCTCCCTAACCATGGGCTCTGGTCCAGAGTTGCAGTACTGAGCGTATTTCCTCCTGTGGAGCAGGCCTTAAATCCACCCAGAAAGCAGCTGGCTACCCTCAAGTTCTGCCACTGTTGCACCCATAGGCACAGTTTGCCATGCTGTTCATTTTAGTCCACACGGCTCACGGCTGGGTAGTGATGATTTTTTTTCCACCCAGCAACCCACATAGCACCTTCTGATACTGTGAAAGCTAGACAGTATGGAGTAAACTTTCTTAAAGAAGTGACCTTCCCGCCAGGTGTTGTGATGCATGCTGGTGTCTTGGGACTGAGGAGACTGGGATGGGAGGACTGCAGCCAGGGTGGGGGCCAACCTGGGCTCCATAGCAAGACTTTGTCTTAGTAAATAAAGCAGAGCAGTCTCCTACCTAAGCTCACAGGCAGGCAAGGGAGCCCCAACAGCAACTGGTAGACTGGGGGTCAGCAGAGAACCTACTGAGAGTCAGGAAAGGACTAGGCATGCTGGGGGAACCACAGCAAGTACCCATCATAGAAGATGAGTCTGTAGGTGGCCTGTGGCCCTAGGCTGTGCATGAATTCTGTGAACTTGGGAGGGGTGTGTGTGTGTGTCTATCATAAAGGCAGTGAGACTAGGCAAAGTGGGTCTCACTGAGCTTTCTGTATATTTTGAATAGTATAAAATTATATAAAATTTATATTCATGACTCCTGGCTTGTCATTTGTCATACAGTTGTGTTTGTCCTGTCACCCTGCCCCCACACGTATGTTTAAAATGCCAAAATAAACCATTGTTGTCACATTTTTCCCAG
Seq C2 exon
GATGGAAGGGGGCAAATTTAAGACCCACACTGCAACTTTGCACAAGAAAAAGAAATGGTCTTCTGTGTCTGAAAAAAGACTTCAAAAATGGCCCTCTCAACACTTGGAGAGTGAACAGCCTCAGGTATCTGTGCGGAAGAAGAGGAGGAGGGAGTCGCAGACACCAGCCCAGGAGAGCTTAGAAAGTGAACAGCCTTGGAAAGCCAAGAAGAAGAAGAAGAGGAGGAGGGAGTCCCAGACACCAGCCCAGGAAAGCTTGGAGAGTGAGCAGACTCCAATGTCTATGCTAGGGAAAAGGAGGAGGGAGTCCCAGACACCAGCCCAGGAGAACTTGGAAAGTGAACAGCCTTGGAAAGCCAAGAAGAAGAAGAGGAGGAGGGAGTACCAGACACCAGCTGAGGAGAGCTTAGAGAGTGAGCAACCTTGGAAAGCCAAGAGAAAGAAGAAGAAGGAGAAGGAGTCCCAGCAGCTTACTTCTTCCCTTCTGAAAAATTCAGAGACCTTCCATAAAGCTAAAAAAACCACTGCTGCCCACAAAAAGAAAAAGAATAGTGTTTGGGAGGTGGATATGGAAACTGGGATCATTCTTGTGGATAAAGAAAACATGGAGAACCTGCTAGAGACTTCTAGAAAGGATGTGGATATTGTTTATGTTGATATGAGCAAGGGACAAAGGTCAGCAAAAGTGAATGAAACAGAAGAGCTGCCCATGGCTGAAACCCAGAAACGTGACTGTCGAGAGCTGCACAGTGATATCAGGAGCAAAAAGAATCAAAAGCACCCCCAGAAAATTGCACCCCAGGATGCTATCCAGGGAACCCAGCCTGAGAGGATCTCCCTGCCCCAGTCAGAGTCCTTGTCTCCTGTGGATCTAGAAGGCAAAAACACAAAAATAGCAGTGTTTTGTAAGAAGAAGTCTAAAAAAAAAGTGTTCAGGAGCCAAGAATTGGAGGCCGTCTCTGAGAGTCTTGTTAGCTCAGAGACTATCCCTGAGAGTCTTGATAGTGCACACCATGGAGGAGAGGATGAGACTGAAGAAGAAGGTGAGAGCATCAAAGAATCCCACAGGATCCGGAAAAAGTCCAAGAAGAAGAAGCACAAGTCTGTTACTCTTGCCACCTCTGGTGACAGTGTCTCAGTGCTGGACAGCACGGCTGAGAGTGCCCTCGTGGACTCACCAGAAGGGAGTGGTACTTTGAGGGAAGAGGACGTGGACCACGGGTCAACAGAGGCAGAAGCCCAGGCCCGTCCCACCGAGAAGCACAGGAAGGAGATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039777:ENSRNOT00000061029:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]