BtaINT0154679 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102508985-102515271:-
Coord C1 exon
chr11:102515244-102515271
Coord A exon
chr11:102510010-102515243
Coord C2 exon
chr11:102508985-102510009
Length
5234 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
AAATAGACTGTGTTGTTAAGTTC
3' ss Score
-1.49
Exon sequences
Seq C1 exon
GCAAGGGGACGACGCGTTTGGCCCGTAG
Seq A exon
GTGAGAGTGCTTTTCAGTTGTTCCGGTTTTTTTCCCCCAGTGATCGTGTCTGAACCAAGCTGTTTATGGCCGCTTGTCTTCATCTCCCCAGAGGCCTGCGTTGGACCCAGGTCCCCAGGGATGGACGTGGTGCCTGTTTTCTCGCAGCCGCTCCAGGCCCTTCCACGCGGGAACTTTCGTTGTTGTTGTTGTTGTTGTTTTTCCTATCAGCCCCGGAATGCCCGTCCCGGGGCCGAGCGGGGTCTTCATGGAACCCCAGAGTGGAGAGGGAATCCGGGACCAGGCTTGGGCACATCCCTGCAAGACAGGAAGTGGTCTATTCTGAATATAAATAGGGATAAATGCATATAAATAGGGATGCTGCTGCTGCTGCTAAGTCGCTTCGGTCGTGTCCGACACTGTGTGACCCAATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGGTGAACAAGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCGACCCTTCGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCATAAACAGGGATAAATGCGTATAAATAGGGATAAATGCATATCCAGGGAACCGTTTAGGAAACAAGCAGGACGAGGAGACCGTAGCCCTTAGGTGGCCGGTTACATCCCTCCAGAGCTAAGTGCCGGAAACAGCTGGATTGTTGAGAAACCCTGTAAGGAGGAGGCGGGACCCAGGAGGAATTAGAGGAAGTGATTTTCAAACTTAAGACTAGTTATAGCGCAGAAAGGTAACGCAGAGGGAAATGCATTCCTGGGAGAATGAGGTGCTTTTGTAAATTCCCTGATAAACATATGGTATATTCTGGGGACATAAAGAAAACAGGATGTCTGAAACCCACAGAAAAACGAGAGGTGGAGAGGTGGTCTTGGACCAGACTAAATCATAAAGGGAATGGTAGATGTGTAAGGATTTGGGATTCTGTCTTAAGAACAATGGAGAGGCCATTAAAAAAAAAAAAAGGTTTTTAGTGGGGAAGTGACCCTATATATAAAAGGTTGTGCTAAGTTCAAGAAACCAGGAGGAGCAACATAGAAGGTATTTACCAAAAAGAAAGAAACGGATGGAAGGTAAATGAATATTTAAAAGAATTATCTGCTCTGTTCATTGTTATTAAGAGAGCTCGAGAGAATTCTCTGGTGGTCCAGTGGTTAGGACACCATGCTTGCACTACAGGGGACATGGGTTTGATCTCTGGTCAGGGTGGCTCAGCTGGTAAAGAGTCCACATGCAATGTGGAAGACCTGGGTTCAGTTCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAAAAGGCTACGCACTCCAGTATTCTGGCCTGGAGAATTCCATGGGCTGTATAATCCATGGGGACAAAAGAGCTGGATGGGACTGAGCGACTTTCACTTTCAGGGAAGTAAGATCCCACAAGTTGTGTGGTGTGGCAAAAAAAAAAAAAGAAGTTTTGTTGTGAAAGGGAGGAAAGAGAATAGCTAGATGGGACTTTGGGATTGGAGGATAGTGGCATCCTTGTGTTTTAAGTTAGAAAATAGTCTGAAGATTGTTGGACGTTGCTAGAAGGGATCCAGTGCAGGAGGCAGAAGGGGAGAGACTGGTTAGCTGATGGATCACCGTCTCTCTGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGGATCCAGCACACAGGGAAGAAATGGTCTCTGACAGGAGAAGAAACACTTCCTTTGCAGCAGCAAGAGGGGAGAACAGGGCAAATGCAGGCAAACATGTTAGATTTGGGGGAACATATTTCTTAGCTAATGTGTGTAAGGCTGTGAGGTCTGAGGCAAGTTAATCTACTTCAGGTCAGAGTGAAGGATGAAATATTGTAGCTTGTTGAGCTACAAAATTCGTGTGTGCTAAATCATTTCAGTCGTGTCCAACTCTTTGCAACCCCATGGACTGTACCCCGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCGGTATCTTCTATATCTCCTGCACTGGTAGGTGGGTTCTTTACCACTAGCGCCACCTGGGGAGATTTGAAATAACCATTTCAAGAAGAGTAGGCAAGTGAGCCTTCTGGAGCACTGCTGTTCTCAGAAAACGTAAGAACACAAGCCACGTGTGTCATTTAGAATTTGCTAATAGCTACATTAAAAAAAAAAAAAAAAGGAAAGAGAAGTAGGAATGCACATACTGAACGATATCCAAACCATCATTTCATCGTGAAAGCAATAAACAACAGTTATGGGTGAGCTCTTTCTCTGTCTCTGTTCCAAGTCTTTGAAATGCAGTATGTATTTACGCTTAGACGCAGTTTGGCCTAACCACGTTTAAGTACTCAGCAGCCTCGTGTGGCTCGTGGCTGCCGTATTGGACAGCACAGAACTAGAGAGACAGGGCTCAGTTGCTGGTCACTGCTCAGGTCCCAGCTGTCATCAGCAGCCAAGGGCTTAAAGCAGTGCCCATCTGCCCAGTTGTGAGTTTTTTCCTCCAACTGTTCTTAACAGTTCCAGAGCAACCAAAGAGAAAGCATTAATTCATTCTCAAAACGTATTTATTGGATTCCTCCCGTGAACCAGGCACTGCTAGACGCTGGGGCTCTGGTAGTGGAGGAGACAGCCAAAGCCCGCTGGGCCCTCTCTGAACAGGCTATCGAGTTGCAGCCATTACACTGCTTACAGCTGAGGTCTCAGAGAGTCAGAGATGGGTGTCCATGTGTCTGAGTGATGCCAGGACGAGAGGCCTCCACCAAAGCTCCTGGTGCCTCCGTTGCAGGTACAATCATGAGGCTGGGGATTTGGCTTTTAGTCTGATCAGTCCACATGTTTGTCGTTCCCAGACCTTCCAGCTACACAGTTCTTTTTTTTTTTTTAATATTTGGCTGCTGCAGGGACGTTCTCCAGTTGTGGCGAGCAGGGGCTGCTCTTGGGTGCAGTGCACAGGCTTCTCATCGGGGGGCTTCTCTTGTTGCAGAGCAGAGCACGGGCTCTAGAGCGCAGACCCAGTCGCTCCGCAGCATGTGGGACCTTCCTGGACTGGGGATTGAATTCAGGTCCGCTGCATTGGTAGCGGGGACTCTTAACCACTGGACCACCAGGGAAGCCCCACAACTCTTACAGTTTCTTTACTACCTAGGAAAAAGTAGGTACCTTCTGTAGAAAATATGCGTAGCATTCCGAATTGAAAGACCATTGATACAGAGAGGTCTCCAGAATCTGTTAGCTGAAAATCACAAAATGCAGATCGTAAAATACAGACACCGTGTGAGGGGCTTCTTAGGTGGTGCCAGTGATAAAAACCCCGCCTGCCAAGAGACAGAAGAGATTTGATTCCTGGGTGGGGAAGATCCCCTGGAGGCGGGAACAACAATCCAATCCAGTGTTCTTGCCTGAAGAATCCCATGGAGGGAACAGCCTGGTGGGCTACAGTCCAGAGGGTCACAAAGAGCCGGACACAAGCACAGTGACTTAGCACTCACGCACCTTCGGTGTGAGAAGGAGGGCTACGCAGAGGTCACTTTGATGTTTGAACCCTGTAAACATACTTCCTACTTACAGAGAAGTAAAGTCTTAAAAATTGAAACCAGAAGCAGTACAGAGCAAGGAGAGAAGACATGTTTGTAAAATTATATTTTTAACCATGTCTTTTGTGAAGTACATATCTATTCCTGTACTTAACCTCCAGAGTGCACATGCTCTGTATAAGAACTGACTTGGAGGCCTTATTAAACTTCATTCCAACTAACTGCAGAACTTGGACTCCTCTTTGAACCACTAATAAGGCCCATTCAGCCTCTTTCTCAAAGAGGTAATCTTTTAGCTTGAGGTCAGTGGTTGCCTGCTGTCCTCGCTGTGAACCACAGCTGGGCTAAATGCTGTAAAAGAGAAATAGTTTGCTGTGAAAGTATATTGTCTGGGGAATAGACAAAGCCCAAGCAATCAGGAAAACTTTCTTTTCTGTCTTTCCCTTTTGTAGATACTTAGTACATTTATATCCTTCATTTGCTTGCTTTTAACACAAGTGAAAGCAGCCTGTGCCCTTGTTCTGCCCCTTGCTTTATAAAGTGAACTATTTAAGGCAGTCAAGTAAGCGTAGACAAAAATATAACAAACACCCCTGTACTCATTACTCCAGTTAAGAAATAAAAGACTGCAGGGACTTTCCTGGCAGTCCAGTGGTTAAGACTCTGCACTCCCACTGCAGGGAACAAGGGTGGATCCCTGGTTACAGAACTGAAATCCCACATGCCGTCATAGGGCGTGGCCTAAAAAAAAAAAAGGAAGAGAAAGAAAAATTTACAGATATGAGAGAAGCTGGCTCTCTGCTAAGCTGCTAAGTTGCTTCAGTCGTGTCCGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAACGTGAAGTCGCTCAGTCCTGTCTGACTCTTAGCAACCCCATGGACTGCAGCCTATCAGGCTCCTTTGTCCATGGGAGTTTCCAGGCAAGAGTGCTGGAGTGGGGTGCCATTGCCTTTTCCGAGCTGGCTCTCTACTTGTCCCTAATCCCTGATTTGCCAGTTTACTGTGTTTATAGTTTTGCCACATATATATCCATTCAGAAAAGATACATGAAACTGTTTTTTTGTGTTTTAAATGTAATATATTTGGTTGTTATTAGTCTGACTCTTTGCAAACCCATGGACCATAGCCCACCAGGCTCCTGTGTCCATGGGATTTCCCAGGCAAGGATACTGGGTGTGTTGCCATTCCCTTCTCCAGGGCCAGAGCGTTGTTCTCAGCTAACTGGTTTTTCTTCCTATATCATAAAGGCAATGGAAGCAGACAAGTGAATTATAGTGAGCTTGCTGTGCATTTAGAATAATAGGACATTTATAATCATGACTCCAGGCTTATCATTTGTCATGCAATTTCATCTTTCTGTGATTTTGTTTTCTTTATTCTGAGGCTAATGTATAAAATGCTCTGCAAAAATAGACTGTGTTGTTAAG
Seq C2 exon
TTCCCCTACAGGAGTAAAATGGAAAGAGAATCAAGCAGCTTAGAAACCCAAACTCCCATTTTCGTGAAGAAAAAGGCTAAGCATTCTAAACATAAGGACAGACATCGGAGGCATTCCCAGGAGAGTTTCAGAGCCGCCCCCCTGGCAAACGAGCAGTGTGACATAACAAAGAGTAAAAAAAAGAGAAAGGCCAGCCAGCGTCTCGTTTCTTCTCCTTTGAAGATAACAGAAATCTGCGATGAGACTGAAATGGCCACATCTAAACCCAAAAAGAAGAAAAAGAGAAGAAAAAGTGCTTCGGGAGTCGACGAGGAAACAGGTGTTGCGTACATCCTGGTGGATAAAGAAAATATTGAGAACACACCTTTCAGAAGCGATGTGGATGTCGTTTACGTTGATGCGAGCAAGGAGCAGAAGTCGACAGAACGGCCTGAAGTAGACGAACCCCATTCAGGTACTAAGCCACTTGAAAACACGTCCGAGGAGCTGCACAGTGAAGTTCGGAAGAAGAAGAAGAAGAAAAAGCATAAAAAACGTCAGAGGGAAGTTGAATCCTGGGATGCTGTCCAGGAAAGTCCGGGTGCAAGCATCGCCCTGCCCAGGGCAGCCTCCCAGGAGCAGGAACCGCAGCCTCAAGTGGACCAAGAAGAGGGAATCGTGCAACTCTCAATGTCTGCGGGTCACAGCAAGTCCAGGAAAAGGAAGAGGAAGCATCCAGATCCCCCAGAATTCGAGGCCTTGGCTGCGCCCGAGAGGGCCCAGAGTGTGTACTCGGAGGGATCCCGAGTAGCCGACGAGGTCGAGACTTCAGGAGGCAGTCAGGATTCCAGCGGCCTCAAGAAAAAGTCTAAGAAAAGGAAGCGAAGATCTCTTGAGAGCACCGTGGAGCCTGGTGATTTTTCAGTGCCCAGGAGGAGCTCTGAGGACACGCCTCTTGATTCCCTGGAAGGTACCTTGGTTGAAGGAAGTGCGAAACCCAGGCCACAAGAGGAGAATCCCCAGGCCTGTTCCAAAAAGGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710:ENSBTAT00000024905:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.973
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development