BtaEX0038214 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102505446-102515271:-
Coord C1 exon
chr11:102515244-102515271
Coord A exon
chr11:102508985-102510009
Coord C2 exon
chr11:102505446-102505666
Length
1025 bp
Sequences
Splice sites
3' ss Seq
AAATAGACTGTGTTGTTAAGTTC
3' ss Score
-1.49
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCAAGGGGACGACGCGTTTGGCCCGTAG
Seq A exon
TTCCCCTACAGGAGTAAAATGGAAAGAGAATCAAGCAGCTTAGAAACCCAAACTCCCATTTTCGTGAAGAAAAAGGCTAAGCATTCTAAACATAAGGACAGACATCGGAGGCATTCCCAGGAGAGTTTCAGAGCCGCCCCCCTGGCAAACGAGCAGTGTGACATAACAAAGAGTAAAAAAAAGAGAAAGGCCAGCCAGCGTCTCGTTTCTTCTCCTTTGAAGATAACAGAAATCTGCGATGAGACTGAAATGGCCACATCTAAACCCAAAAAGAAGAAAAAGAGAAGAAAAAGTGCTTCGGGAGTCGACGAGGAAACAGGTGTTGCGTACATCCTGGTGGATAAAGAAAATATTGAGAACACACCTTTCAGAAGCGATGTGGATGTCGTTTACGTTGATGCGAGCAAGGAGCAGAAGTCGACAGAACGGCCTGAAGTAGACGAACCCCATTCAGGTACTAAGCCACTTGAAAACACGTCCGAGGAGCTGCACAGTGAAGTTCGGAAGAAGAAGAAGAAGAAAAAGCATAAAAAACGTCAGAGGGAAGTTGAATCCTGGGATGCTGTCCAGGAAAGTCCGGGTGCAAGCATCGCCCTGCCCAGGGCAGCCTCCCAGGAGCAGGAACCGCAGCCTCAAGTGGACCAAGAAGAGGGAATCGTGCAACTCTCAATGTCTGCGGGTCACAGCAAGTCCAGGAAAAGGAAGAGGAAGCATCCAGATCCCCCAGAATTCGAGGCCTTGGCTGCGCCCGAGAGGGCCCAGAGTGTGTACTCGGAGGGATCCCGAGTAGCCGACGAGGTCGAGACTTCAGGAGGCAGTCAGGATTCCAGCGGCCTCAAGAAAAAGTCTAAGAAAAGGAAGCGAAGATCTCTTGAGAGCACCGTGGAGCCTGGTGATTTTTCAGTGCCCAGGAGGAGCTCTGAGGACACGCCTCTTGATTCCCTGGAAGGTACCTTGGTTGAAGGAAGTGCGAAACCCAGGCCACAAGAGGAGAATCCCCAGGCCTGTTCCAAAAAGGTGCAGAG
Seq C2 exon
GTCAGAACCTACAAATGACGACGAAAGCAATTCGGCTAAAGATTCCGTAGCTAAATACTTATCTGAAGATTCGCGAGATTCCGAAGATCCGGAGGTGGACTTGGAGTCTGCAGTGAAGCAGCTGCAGGAATTCATCCCGGACATCAAGGACAGGGCTGCCACCACCATCAAGCGGATGTACCGAGATGACCTGGGGCGGTTTAAAGAGTTCAAAGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.973 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGGACGACGCGTTTG
R:
TGGGCTTTGAACTCTTTAAACCG
Band lengths:
246-1271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development