HsaEX0068034 @ hg19
Exon Skipping
Gene
ENSG00000125482 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:12397]
Coordinates
chr9:135275422-135282209:-
Coord C1 exon
chr9:135282177-135282209
Coord A exon
chr9:135276842-135278215
Coord C2 exon
chr9:135275422-135275645
Length
1374 bp
Sequences
Splice sites
3' ss Seq
GTTGTCACATTTCCATATAGGAA
3' ss Score
7.87
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGGTTGGGAGAAAGGTGGCGGCGCTTTCGGAGG
Seq A exon
GAATAAAATGGAAGGAGAATCAAGCAGATTTGAAATCCACACTCCAGTTTCTGACAAGAAAAAGAAAAAGTGTTCTATACATAAGGAAAGACCTCAGAAACATTCCCACGAAATTTTCAGAGACTCCTCCCTGGTGAATGAACAGTCTCAAATAACTAGGAGGAAAAAGAGGAAAAAAGATTTCCAGCATCTCATTTCTTCTCCTTTGAAAAAATCCAGAATCTGTGATGAGACTGCAAATGCCACTTCCACACTCAAAAAGAGAAAAAAGAGAAGATATAGTGCTTTGGAGGTGGACGAGGAAGCAGGTGTTACAGTTGTCCTTGTGGATAAAGAAAATATTAACAACACACCAAAGCATTTTAGAAAGGATGTTGATGTTGTTTGTGTTGATATGAGCATAGAACAGAAGTTACCAAGAAAGCCTAAAACAGACAAATTTCAGGTACTTGCTAAGTCACATGCACATAAATCAGAAGCCCTGCACAGTAAAGTTAGGGAGAAAAAGAATAAAAAGCATCAGAGGAAAGCTGCATCCTGGGAGAGCCAGCGGGCAAGGGACACCCTGCCTCAGTCAGAATCCCACCAGGAGGAGTCCTGGCTTTCTGTGGGTCCAGGGGGTGAAATTACAGAACTACCAGCATCTGCTCATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAGTAACCGGGAATATGAGACACTGGCCATGCCTGAAGGATCGCAAGCAGGCAGAGAGGCCGGGACTGATATGCAGGAATCCCAGCCTACTGTGGGCTTGGATGATGAAACTCCACAACTACTAGGACCTACTCACAAAAAAAAGTCTAAGAAAAAAAAGAAGAAAAAGTCCAATCACCAGGAATTTGAGGCATTGGCCATGCCTGAAGGATCACAAGTGGGCAGTGAGGTTGGGGCTGATATGCAGGAATCCCGGCCTGCTGTGGGCCTGCATGGTGAAACTGCAGGAATACCAGCACCTGCTTATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAATCACCAGGAATTTGAGGCAGTGGCCATGCCTGAGAGCCTCGAGAGTGCATACCCTGAAGGATCACAGGTGGGCAGTGAGGTTGGGACTGTGGAAGGCAGTACAGCTCTTAAAGGGTTCAAGGAATCCAACAGTACAAAGAAGAAGTCTAAGAAAAGGAAGCTTACGTCTGTCAAAAGGGCACGAGTGTCTGGTGATGATTTTTCAGTGCCCAGTAAGAACTCTGAGAGCACACTCTTTGATTCAGTAGAAGGTGATGGCGCCATGATGGAAGAAGGTGTGAAATCTAGGCCCCGACAAAAGAAAACCCAGGCCTGTTTGGCAAGCAAGCACGTGCAAGAGGCGCCAAG
Seq C2 exon
GTTAGAACCTGCAAATGAAGAACACAATGTGGAAACAGCTGAAGATTCCGAAATAAGATACTTATCTGCAGATTCAGGAGATGCCGATGATTCAGATGCGGATTTGGGTTCTGCCGTGAAACAGCTTCAGGAGTTCATTCCTAACATCAAGGACAGGGCCACCAGCACAATCAAGCGGATGTACCGGGACGACTTGGAACGGTTTAAGGAATTTAAAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125482_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.930 C2=0.421
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGGAGAAAGGTGGCG
R:
TGTGCTTTAAATTCCTTAAACCGT
Band lengths:
254-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)