MmuEX6100049 @ mm9
Exon Skipping
Gene
ENSMUSG00000026803 | Ttf1
Description
transcription termination factor, RNA polymerase I [Source:MGI Symbol;Acc:MGI:105044]
Coordinates
chr2:28915782-28922749:+
Coord C1 exon
chr2:28915782-28915823
Coord A exon
chr2:28920139-28921428
Coord C2 exon
chr2:28922523-28922749
Length
1290 bp
Sequences
Splice sites
3' ss Seq
GTTGTCACATTTTCCTAAAGGGA
3' ss Score
5.55
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAACACTTCCGGGTTGGAAGACGAGCGCTACATTGTCGCTGG
Seq A exon
GGACAGGATGAAAGGGGGCACAAGCAAATTTAAGACCCACACTGAAACTTTGTACAAGAAAAAGAAATGGTCTTCTGTGTCTGAAAAAAGACCTCAGAAATGTCCCTCTCAGTGCTTGGAGAGCAAGCAGCCTCAGGTATCTGTGTTGGGGAAGAGGAGGAGGGCGTCCCAGACACCAGCCCAGGAGACCTTAGAGAGTGAGTGGCCTCAAAAGGCCAAGAGGAAGAAGAGGAGGAGGGAACCCCAGACACCAGCCCAGGAGACCTTAGAGAGTGAGTGGCCTCAAAAGGCCAAGAAGAAGAAGAGAAGGGGGGAACCCCAGACACCAACCCAAGAGAGTTTGGAGAGTGAGCAGCCTCCAGTGTCCTTGCTGGGGAAGAGAAGGAGGGAATCCCAGACACCAGCCCAGGAGAACTCGGAGAGTGAGCAGCCTCGGAAAGCCAAGAGAAGGAGGAAGAAAAGGAAAGGGTCCCAGCAACCAACTTCCTCCCTTCTGAAAACTCCAGAAACCTTTCTTAAAGCTAAGAAAACCACTTCTGCCCACAAGAAGAAAAAGAATAGTGTTCTGGAGGTGGATATGGAAACTGGGATCATCCTTGTAGATAAAGAAAACATGGAGAACCTGCTAGAGACTTCTAGAAAGGATGTGGATATTGTTTATGTTGATATGAGCAAGGGACAAAGGTCAGCAAAAGTGCGTGAAACAGGAGAGCTGCCCGCTGCTAAGCCACAGGAACATGGCTGTCGAGAGCTGCTCGGTGACGTCAGGAGCAGAAAGAAACAAAAGCACCTCCAGAAAGTTGCACCCTGGGATGTTGTTCAGGGGAGCCAGCCTGAGAGTATCTCCCTGCCCCCATCAGAGCCCTTGTCTTCTGAAGATTTAGAAGGCAAAAGCACAGAAGCAGCAGTGTTTTGTAAAAAGAAGTCTAAAAAAAACGTGTTCAGGAGCCAGGAATTGGAGCCCATCCCCGACAGTCTTGATGACTCGGAGACCATCTCTGAGAGACTTGATAGCACACACCATGGAGGAGCTGTCGGGGCTGGAGAAGAATGTGAGAGCACCAAAGAATCCCACAGTATCAAAAAAAAGTCCAAGAAAAAGAAGCACAAGTCTGTTGCTCTTGCCACATCTAGTGACAGTGCCTCAGTGACAGACAGCAAGGCTAAGAATGCCCTGGTGGACTCCTCAGAAGGCAGTGGTGCTGTGAGGGAAGAGGACGTGGACCACAGGCCAGCAGAGGCAGAAGCCCAGGCTTGTTCCACTGAGAAGCACAGGGAAGCCATGCAGAG
Seq C2 exon
GTTAGAACCTACCCATGAAGAAGAAAGCAATTCGGAATCAGCTAGCAATTCTGCAGCAAGACACATATCTGAGGACAGGAGAGAGTCTGATGACTCGGATGTTGATTTGGGCTCTGCAGTGAGACAGCTGCGAGAGTTCATTCCTGACATACAGGAAAGGGCGGCCACCACCATCAGACGCATGTATCGGGATGACCTAGGGCGCTTCAAAGAATTTAAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026803-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.946 C2=0.494
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGGTTGGAAGACGAGC
R:
CTTGTGCCTTAAATTCTTTGAAGCG
Band lengths:
262-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: