HsaEX0068034 @ hg38
Exon Skipping
Gene
ENSG00000125482 | TTF1
Description
transcription termination factor 1 [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr9:132400035-132406822:-
Coord C1 exon
chr9:132406790-132406822
Coord A exon
chr9:132401455-132402828
Coord C2 exon
chr9:132400035-132400258
Length
1374 bp
Sequences
Splice sites
3' ss Seq
GTTGTCACATTTCCATATAGGAA
3' ss Score
7.87
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGGTTGGGAGAAAGGTGGCGGCGCTTTCGGAGG
Seq A exon
GAATAAAATGGAAGGAGAATCAAGCAGATTTGAAATCCACACTCCAGTTTCTGACAAGAAAAAGAAAAAGTGTTCTATACATAAGGAAAGACCTCAGAAACATTCCCACGAAATTTTCAGAGACTCCTCCCTGGTGAATGAACAGTCTCAAATAACTAGGAGGAAAAAGAGGAAAAAAGATTTCCAGCATCTCATTTCTTCTCCTTTGAAAAAATCCAGAATCTGTGATGAGACTGCAAATGCCACTTCCACACTCAAAAAGAGAAAAAAGAGAAGATATAGTGCTTTGGAGGTGGACGAGGAAGCAGGTGTTACAGTTGTCCTTGTGGATAAAGAAAATATTAACAACACACCAAAGCATTTTAGAAAGGATGTTGATGTTGTTTGTGTTGATATGAGCATAGAACAGAAGTTACCAAGAAAGCCTAAAACAGACAAATTTCAGGTACTTGCTAAGTCACATGCACATAAATCAGAAGCCCTGCACAGTAAAGTTAGGGAGAAAAAGAATAAAAAGCATCAGAGGAAAGCTGCATCCTGGGAGAGCCAGCGGGCAAGGGACACCCTGCCTCAGTCAGAATCCCACCAGGAGGAGTCCTGGCTTTCTGTGGGTCCAGGGGGTGAAATTACAGAACTACCAGCATCTGCTCATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAGTAACCGGGAATATGAGACACTGGCCATGCCTGAAGGATCGCAAGCAGGCAGAGAGGCCGGGACTGATATGCAGGAATCCCAGCCTACTGTGGGCTTGGATGATGAAACTCCACAACTACTAGGACCTACTCACAAAAAAAAGTCTAAGAAAAAAAAGAAGAAAAAGTCCAATCACCAGGAATTTGAGGCATTGGCCATGCCTGAAGGATCACAAGTGGGCAGTGAGGTTGGGGCTGATATGCAGGAATCCCGGCCTGCTGTGGGCCTGCATGGTGAAACTGCAGGAATACCAGCACCTGCTTATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAATCACCAGGAATTTGAGGCAGTGGCCATGCCTGAGAGCCTCGAGAGTGCATACCCTGAAGGATCACAGGTGGGCAGTGAGGTTGGGACTGTGGAAGGCAGTACAGCTCTTAAAGGGTTCAAGGAATCCAACAGTACAAAGAAGAAGTCTAAGAAAAGGAAGCTTACGTCTGTCAAAAGGGCACGAGTGTCTGGTGATGATTTTTCAGTGCCCAGTAAGAACTCTGAGAGCACACTCTTTGATTCAGTAGAAGGTGATGGCGCCATGATGGAAGAAGGTGTGAAATCTAGGCCCCGACAAAAGAAAACCCAGGCCTGTTTGGCAAGCAAGCACGTGCAAGAGGCGCCAAG
Seq C2 exon
GTTAGAACCTGCAAATGAAGAACACAATGTGGAAACAGCTGAAGATTCCGAAATAAGATACTTATCTGCAGATTCAGGAGATGCCGATGATTCAGATGCGGATTTGGGTTCTGCCGTGAAACAGCTTCAGGAGTTCATTCCTAACATCAAGGACAGGGCCACCAGCACAATCAAGCGGATGTACCGGGACGACTTGGAACGGTTTAAGGAATTTAAAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125482_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.930 C2=0.393
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGGAGAAAGGTGGCG
R:
TGTGCTTTAAATTCCTTAAACCGT
Band lengths:
254-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development