RnoINT0158240 @ rn6
Intron Retention
Gene
ENSRNOG00000010170 | Tubb4b
Description
tubulin, beta 4B class IVb [Source:RGD Symbol;Acc:735101]
Coordinates
chr3:2443810-2444281:-
Coord C1 exon
chr3:2444225-2444281
Coord A exon
chr3:2443919-2444224
Coord C2 exon
chr3:2443810-2443918
Length
306 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
AACGCCCGACTCCCTTGCAGTTC
3' ss Score
6.5
Exon sequences
Seq C1 exon
ATGAGGGAGATCGTGCACCTGCAGGCTGGGCAGTGCGGCAACCAGATTGGCGCCAAG
Seq A exon
GTAGGAGGTTAAGTTTCTGCGGGACGGACGCCCCTGGGACAGCTAGCCAGGGAAGATGGCGGAAGCGGCCGACAGCGTCGCCCTTCATTGCGTCCTGGTTACCGGCGTACGCTGGGCCGAGTTGTAGAGCCGGTGGCTGGTGGCGGCGGGGCAGACGGTGCGCGGCCCTTAGGGAATCCGTCGCCCAGGCACTCTTGAGACCGGAGTGGGGTGGGGGGGGGAAGGGCCTGCCGCACCCATCCGGGGCGGAGCTGCCTTGGAGCGCACCGGCCGCCGTGACTCAGCTAACGCCCGACTCCCTTGCAG
Seq C2 exon
TTCTGGGAGGTAATCAGCGACGAGCATGGCATTGATCCCACTGGCACGTACCACGGAGATAGCGACCTCCAGCTGGAGCGCATCAACGTGTACTACAACGAGGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010170:ENSRNOT00000013863:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]