RnoINT0160584 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10155910-10156445:-
Coord C1 exon
chr17:10156358-10156445
Coord A exon
chr17:10156079-10156357
Coord C2 exon
chr17:10155910-10156078
Length
279 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CCCATGTTTCCCCACTTGAGGTT
3' ss Score
3.97
Exon sequences
Seq C1 exon
GGATCAGCCTCCTCATACCCCCGGATGCCATCCCCCGAGGAAAGATCTACGAGATCTACCTCACACTGCACAAGCCAGAAGACGTGAG
Seq A exon
GTGTGTGCCCTGCCCTGCCGTGGTGGGGGATTGAGGGGTGGGGGCTGGGAGGGCACTGCCTGCTGTCCCATCGCTGGAACACCCCCCACCCCAGCCCAGCAACTGCTCTGACCAGGCCTGAGGGGGCACAGGGCGTGAGGCACACTTAAGCTCACCCTGCTTTGCAGCTCCTGTCCTAAGGGTGTCACCCACCCCACGTAGAGCCCGACTCCTAGCCCCACGGTCTCTAGGACTGGCCACTGACGCCTTTCCCTCTCCGCCCATGTTTCCCCACTTGAG
Seq C2 exon
GTTGCCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCAGTCGTTAGCTGTGGGCCCCCAGGAGTCCTGCTCACCCGGCCAGTCATCCTTGCAATGGACCACTGTGGAGAGCCCAGCCCTGACAGCTGGAGTCTGCGCCTCAAAAAGCAGTCCTGCGAGGGCAGTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.2=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGCCTCCTCATACCCCC
R:
CTCCCAACTGCCCTCGCA
Band lengths:
256-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]