DreINT0171854 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29082053-29083293:+
Coord C1 exon
chr13:29082053-29082140
Coord A exon
chr13:29082141-29083124
Coord C2 exon
chr13:29083125-29083293
Length
984 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTCTGTGTTTTTGTTGTCAGGTT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GGGTAAGCCTGCTGGTTCCACCCGGGACGATTCCTCAGGGCAAGTTCTACGAGATGTACCTCATTATCAACAAATGGGAAAAAACAAC
Seq A exon
GTAAGTCAGACTCTTAAAACGGCTTTTCAGTGCCCTGCCCTCATCACACTGTCATTTCCCAACACATAACACTTGCATTTATCTGTCACTTTGAGCAGATGCAAACAATCCAGTTCAAAACACCCTGACAGCCCTTGCTGAGCAATATTGACTGCAAAACCATTGTGACCCCAATGGCAGCACTTGGGAGGAAATAACATTTCAAAACTATGACACAGCAGAAAAAACACAAACAAACAAATATGTCTTGAAAAACAGTGAACGGTTGTCTGAGCTTTGACTTTTTTGCTGAGGCTCTATTTTTTTAACAGTTTTTGTTTTTATTGTCAAATATGAAACATATAAATTTCACCATGCCTTTAGAGCTTTCAGCTGCAATAGTGTTTCTCACTAGTTGGAGGTGCCATACATTTTCTCCAAACATAAACAATTTGTCACACATTCTAGTCTTTTGTGCTCATGTGGCCAAAAGAGTTTCAGTCTATCTTGTAACATTTCTGCTCATGATCCTGCCATTTTTCCTTTCCACTGTCCTCGTAAATAAAAAATACTTTAAATACCGTCTTAAAACCGTATTTTTATTTTATTTTATTTTGTTTTATTCTGTTAATTCCAGCTGGGTTAAATCTGGTAATATTCAGATTTGATTCTCTCATAAATTTTATACAATAATATTTTATGCAGTATATATATGCGAGAGTTTGTGGGCATGCATGGAGATTTTTAATGCATTATGAGGGCTAAATATGCAGAATTTCAGTGTTGCCGTAAAGTTTACATCTTTCTTTTTTTTTATTTAGCTTTTATTGAAATTAAATGGATTCTGTGTCAAATTATGCTTTTAAAAAAATGCCACAGAGTACGGTGGCATCTTACAATCGTTGCAGCGTCCAAATACATTTTGCATGCTGAAAATCACCACGGCTTGAATGTCAATGTGAATTAAGGCTGCTGAACTGTGTCCCTCTGTGTTTTTGTTGTCAG
Seq C2 exon
GTTGCCATCAGATGGTAGTCAGACAGTATTAAGTCCGGTGGTGAGCTGCGGACCCTCAGGCATGTTGTTGAGCAGACCTGTGGTCCTCACTCTGCCCCACTGCGCACAGCTGGAGCCCCCAGACTGGACCCTCACCCTCAAAATGCAGAACCATCAAGGTGCTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.2=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGCCTGCTGGTTCCACC
R:
CTCCCAAGCACCTTGATGG
Band lengths:
255-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]