RnoINT0160600 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30349706-30351182:-
Coord C1 exon
chr20:30351095-30351182
Coord A exon
chr20:30349875-30351094
Coord C2 exon
chr20:30349706-30349874
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTCTGCCCTTCCCCACTCAGCCC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GGGTCAGCCTGTTGGTACCAAATGGAGCCATTCCCCAGGGCAAGTTCTATGACTTGTATCTACGTATCAACAAGACTGAAAGCACCCT
Seq A exon
GTGAGTAGACAGGCCAGCCCTGGTCAGCCAGCGCCCCTCCCACTCTGCCCACACTGGCCACACGCGTTTCTGATTGCCCCTTGGAGCTTGGCCTCAATGTCCAGTGTCCCCTCAGAGAAAGCATGTTCTAATGCAACAGCAAACCTTTCCTATGGGAAGGGGATTTATAGACAACCGTATTGCGTATGTCCCATTGCTATGGCAAATGCATGATAAGAACTTAAGGAGGTGGGCTCCATTTGGGCTCGCCATGGTGAGAGTCCCTCTAGTTGTGGTCACAAGAACATGAAGCATTCAGAGTTGGGAACCAGAGAGGGATGAACGCTGGTGTCCAAGGTTCCCTTCCCTTTTCTTTCTTTTTCATTCAGTCTGGGTCTCCAGCCCACAAGTATTGTGGTCCACATATAGGTTGGATCTTCCCTCCTACTTAGACCTCTCTGGGAACATCCTCACAGACAGGCATGTCAGGGGTGCATCTTCTTGGTGACCCCACATTCAGTCAACCTGACAGCAAAGATTAACGATTACGGCTACAAAGAAAAGCTGACCATCTCAGTTTGAACACGGGCATAGAACATAGAACATGAACAAGCAATTCACACACACACACACACACACACACACACACACACACACACACACCCCAAATGGTTTTATTGTTGGTTTTTTTCAAGATGAGGGTCTAACTTTATTTCTGGATAGTCCTGGAACTCACTCTGTAGACTTGACTAGCGTTGAATTCAGAGATCCGCCGGCCTCTGCCTTCCCGAGCGCCAGGATTAAAGGCGTGCACCACTGAGCCCAGCTGGCAGTAGCAGGGGGTGTTCAGAGTCTCCTCCTCCAAGGTCACCACCTCCTGCGGGGGACAAAGAGGAGGTTGTCATCGCGGCTGGGCTCAAAACAATTTTGTTCCTTTTTGTTCTGTTGTTTTGTTTTAAAGACCGGAAAGGAAAAAACAGTGTTCTCTAAAGCCTCAGGTCTTAAGGCTGTGCAAAGCTTTGGCTGAGACTGTTTTGCTGTGACAGCAAAAATCTAGAACTTCCTTATGCTATATCTTCCTTCCCCTCCCTTTGAGATATGGTCCCAGTCCACAGAGGGCAGAGACTTGCCTCGGCGTGGGTCCTGGGTAGAGTTGGGAGTTCCGCAACAGTAGAGTATCTCTCACTAAATGACTACTTCTGGCCTTTGTTTCCTGCCTCCCTCTGCCCTTCCCCACTCAG
Seq C2 exon
CCCACTTTCAGAAGGTTCCCAGACAGTATTGAGCCCCTCGGTGACCTGCGGGCCCACGGGCCTCCTCCTGTGCCGCCCTGTTGTCCTCACTGTGCCCCACTGTGCTGAAGTCATTGCCGGAGACTGGATCTTCCAGCTCAAGACCCAGGCCCATCAGGGCCACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.2=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(15.5=31.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCCTGTTGGTACCAAA
R:
TCCCAGTGGCCCTGATGG
Band lengths:
255-1475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]