BtaINT0157555 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27592974-27594066:+
Coord C1 exon
chr28:27592974-27593061
Coord A exon
chr28:27593062-27593897
Coord C2 exon
chr28:27593898-27594066
Length
836 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCCCCTCCACCTTGCCCCAGCCC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GGGTCAGCCTGCTGGTGCCCAATGGAGCCATCCCCCAGGGCAAGTTCTACGAGATGTACCTCCTCATCAACAAGGCAGAAAACACCCT
Seq A exon
GTGAGTAGACAGACCCAGCCCCAGCCTGGCTGCCCCCTGCTTGGCCTGTCTCCCTGCTGCTTGCCCACCTTGGGCTCAAGTATATCCCCTTCTAAGCCCAGTGCCAAGACCAGAGACAGTTCTCCAAGGAAGACATTGCTCGATATTTGTTCCCATTTAAGTCATGCAAAACCAGCTCAACAATTCATAAAGCTGAAAGCCAGATGACCAGCTGGCTACAATATGACAGAGAGCTAATATCCTAACTATATGAAGAGGTTTGGGAGACCAGTAAGAAAAACTGAATATCTCAGTACAAAAATGGGCAAAGGATATGAACGAGTGATTCACACACACACTGTCATACATACAGATCCATGCACGCAGTCACACAGTGGCCAGTAGGTTATGAGAAAATGTTTGACTTAATTTGAAATCAAAGAAATAGTAAAAGAAAGAGCTATGAGGCACCGGAAGTTTCCCTGCTCATGAATTTGCAAAGATATTTTCAAATGCCATAGTACCTTCATGCTGGCAAGAGTGTGGGAACACAGCCTTCCCATGGCGCGTTGGTGGGAGTGTGGATGGGTACCAGTTTTCCAGAGGGCTTTTTAGCAGTACCTATGCACAGCATCTGCAGAGTGCAGAACCTTTGAAAATGGGAGCAAAGATTTGGCTACGAGAATGTTGTGATGTAATAGCAAAAATATAGAAACGATTTCAAGGCCTGTGCCATTTTTCCTTAACTCTGGGAGCCCCAGGGGTACAGAACTGCCTTCTCTCACCCCAGCAGCCAGGGCGGGGGGAGCCCAGCCCCACTTCCTCACTGCCTCCCTCTCCCCTCCACCTTGCCCCAG
Seq C2 exon
CCCGCTTTCAGAAGGGACCCAGACAGTATTGAGCCCCGCAGTGACCTGCGGGCCCACGGGCCTCCTGCTATGCCGCCCCGTCATCCTCACGGTGCCCCACTGCGCAGAAGTCAGTGCCGGCAACTGGATTTTCCAGCTCAAGACCCAGGCCCACCAGGGCCACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.2=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(13.3=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGTGCCCAATGG
R:
CTGGTGGGCCTGGGTCTT
Band lengths:
238-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]