GgaINT0042392 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12868407-12868743:+
Coord C1 exon
chr6:12868407-12868497
Coord A exon
chr6:12868498-12868574
Coord C2 exon
chr6:12868575-12868743
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CCGGTGTCCCCTGTCCCCAGCTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
TAGGGGTGAGCCTGCTGGTGCCGCATGGAGCCATCCCGCAGGGAAAGTTCTACGAGATATACCTGGTCATCAACAAGGCAGAGAGCGGCCT
Seq A exon
GTAAGTCACACTGCCCTCCCTCTGCCCTCCTCACCTGCCGTGTGTCTCCGGGTCCAACCGGTGTCCCCTGTCCCCAG
Seq C2 exon
CTTGCCCTCTGAGGGCACTCAGACAGTGCTGAGCCCGGCGGTGACCTGTGGACCCACTGGCCTGCTGCTGTGCCGCCCTGTTGTCCTCACCATTCCCCACTGTGCAGATGTCAGCTCCTCGGACTGGATCTTCCAGCTGAAAACACAGTCCCACCAGGGGAACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.8=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCATCAACAAGGCAGA
R:
TGGGACTGTGTTTTCAGCTGG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]