MmuINT1034475 @ mm10
Intron Retention
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60772489-60773831:-
Coord C1 exon
chr10:60773744-60773831
Coord A exon
chr10:60772658-60773743
Coord C2 exon
chr10:60772489-60772657
Length
1086 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CCCTCTGCCCTCCCCCTCAGCCC
3' ss Score
10.19
Exon sequences
Seq C1 exon
GGGTCAGCCTGTTGGTACCAAATGGAGCCATTCCCCAGGGCAAGTTCTATGACCTGTATCTACATATCAACAAGGCCGAAAGCACCCT
Seq A exon
GTGAGTAGACCCGCCAGCCCTGGCCAGCCAGCACCCACCCCTCGTGCTCAGCCCACACTGGGCACACACGTTTCCATTTGCCCTTTGAAGCTTGGTCCCAGTGCCCAGGGTCCCCCAGAGAAAGCATATTCTAATGGGTAGAACCTAGCAACAGCAAACCTTTCCTGTGCAAAGGGGGATTGGTAAGCAACTGCATTGTGTATGTCCCATTGCTGTGGCAAATGCATGATAAGAACTTAAGGAGGAGGGGTTCATTTGGACTCGCCATGGTGAGAGTCCCTCTTCCTGTGGTCACAGGAATGGGAAGCATCCGTAGTCAGGAACCAGAGAGGGACGAACACTGGTGTACGAGGCTCCCCTCACCTTCTCTTTCTTTTTCATTCAGTCCACAAGTTATGTGGGTTCACATACATAATAGAGTGGATCTTCCCTCCTACTTCAATCTCTCTGGGAGCATCCTCACAGACAGGCACATCAGGGGTGCATCTCCTCGGTGACCTCACATCCAGTCAGAGAAAGACTGACCATCTCAGTTTGAACATGGGCGTGAACAAGTAATTCACATGTGCACACACACACACACACACACACACACACACACACACACACACACACACCAAATGGTTTTATTGTTGTTTTTTTTCAAGATGGAGGTCTCACTTTAGTTCTGGCCAGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAGATCTGCCTGCCTCTGCCTCTCCAAGTGCTAAGATTAAAGGCGTGCGCCGCTAAGCCAAGCCTCAATTTGTTTTGTTCTGCTGTTTTGTTTTAAAGAAAGAAAAGAAAAGACAATGTTCTATAAAGCCTCAGACCTTGAGGCTGTGCAAAGCTTTGGCTGTGACAGCAAAAATCTAGAACTTTGTTTATGCCATTTATGCTGTTTCTTCCTTCCTGCCCCTGTGAGATCTCGTCCCAGTCAGCAAAGGGCAGTGACTTGCCTTGGCACGGGCCCTGGGTGGAGTTGGGGGCTCCACAAGAGTCGAGTATCCCTGATGAATGACTTCTTCTGGCTTTTGTCTCCTGCCTCCCTCTGCCCTCCCCCTCAG
Seq C2 exon
CCCACTTTCAGAAGGTTCCCAGACAGTATTGAGCCCCTCGGTGACCTGTGGGCCCACAGGCCTACTCCTGTGCCGCCCTGTCGTCCTCACCGTGCCCCACTGTGCTGAAGTCATCGCTGGAGACTGGATCTTTCAGCTCAAGACCCAGGCCCATCAGGGCCACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099:ENSMUST00000077925:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(28.2=100)
A:
NA
C2:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(15.5=31.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCCTGTTGGTACCAAA
R:
TCCCAGTGGCCCTGATGG
Band lengths:
255-1341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types