RnoINT0160628 @ rn6
Intron Retention
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14502376-14508214:-
Coord C1 exon
chr9:14508160-14508214
Coord A exon
chr9:14502826-14508159
Coord C2 exon
chr9:14502376-14502825
Length
5334 bp
Sequences
Splice sites
5' ss Seq
CAAGTGCTA
5' ss Score
-6.42
3' ss Seq
TCTACCCACTCTCCCTCCAGGCC
3' ss Score
12.04
Exon sequences
Seq C1 exon
AGGGAGCTATTGCTTCTGGACGGGCCCCGTGGGTAGCCAGTCGACATTAAGGCAA
Seq A exon
GTGCTATCTGGGGCAAGGGAATGGGTATACTATGGGGTCCAGGGAAGAGCCAGGGATGAGCCAGGTTTACCACCTTGTGGGGTGGCACAGGGAGAGAAGGAAAGAGGTCTTAAGGAAGGGCTAGTCCTTAAGGAAGGACTCCACTGTGGTCAGGAGTGGGGGCATGAATAGGGGCCTTGAACCGGGTGTGGCTTCATTCATTCTGTCTTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTGGTACTGGGGTTTACAGACTTGGGGTTTAGAGATTTGGGTGTACGAGACAAGTGTTCCACCACTGGGCTACTTCCTCAGTCCCCTTTTGACTTTACATTTCTGTTTGTTTGCTTGAGACAGAATCTTACTATGTAGCCCTGGCTGGCCTGGAACTCACTATGTAGACCAGGCTGACTTCAGACTCACAGAGATCTGCCTGCCTCTGCCTCTCAGGTGCTGAGATTAAAGGCATGCCCCACCACGCAGGGTTCTTACTTTCTAAGACAGGCTCTTACAACATTGCCTGGGATGGTCTTGAATTCCATCTGTTTGTTCAGGCAGGCTTTGAACTTGTGATCCTCCTCCTCCAGTCTCCGGGGTAGCTAGGATTACTGGCTTGTGCCCGCCAAGCCCAGATCAGGCTCGTACTTACTACTGTCTTCAAAAAGCACTCGGCACTCTATCAGGAGGTGCGGTGAGAAACAGGAAGGAGGGGAGGGCTAAGTATGTGCAAATATGAACAGATCTTTGCAGCAGGAGTCTGGGTCTTTGTTCTGAAGGCAGGTGACAATGGAATTCTAATGCCCCTTGTTTAGGGGAAATGCTACCCAGAGTGCTCTGCACTCTGGAGACAGTCGAGTTGGAAGAATTGGGTTCTGAGGAGTCCAGTGCAGAGCTGGAGAAGCCAGTGAGTTTGTAGCGCTATAGACTAGCCTCCTACTAAACTTTGGCTTCTTTCCCTTCTTGAGATCAGAGTGGGGGATGGGGTGAGGGCTAAGAAAGTCTGGAAGAGTGATCCGCTAGACCCCAGGCTGGGGCTGGGGAAGAGTTAGGTTGCTTCAGGCCAGAGAAGTGAGCAGGCTCCCTTGAGAGGCCCAGGGAGCTGTAAGGGTGGTACACACCAATTTTACAGGTGAGGCAGCCGGGCGAGGGGACGTGACCCAGTGAGGTGGAGGGGATTTGGACTCTGGTCTTTAGAGGCCCTGAGAAGGCTGTTGTTATAGTAACAGAGTAGTTCCTCCCATTTCATTCTCTTGTATCTGCCCCTCCCTGCCACTGGAACCTTAAAGGGCTGGCATGAAATGTCATCACTTGTCGTGGGACCCAGAGATGCCTTTATTCTATTTGGTTCCCTTTAGTTCCCCCTCCTCTTCTTCTCCTTCTCCCTCTTCTCCTGTTCTCCTCCCTCCCCTCTGTTTCTTCTCTTCTCCCTCTTTCTCCTTCTGTCCTTCTCCATGTCTCCCCCTCCTCCTCCTCCTATTTCCTGCTTTCTTGGTTTTATTTACTTTGCGTGAGTGTTTTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCATGATTATGTAATGCGCACAAAGAAGAGGTCAGATTATATTTAGGACTGGAGTTATGTATGGTCATGGGCCCCCATGTGTGTGCTCAGAATCAAACTCATGTACTCTGAAAGAGCAGCCAGTGCTCTAACCACAGATCCATCTCTAGCCCCTTCCTTTTTCTTTCTTCCTTCCTCCTTTTTTCCTTCCTTCCTTCCTGCTTGTCTGACTTCCTTTGAGATGCAGTCTCATTATATGTCCTCAAACTCTTAATCCTCCTGTCTTAGCCTCCCAAGTGCTGCTATCTCAAAGCAGAACCATCCTTTCTTCTTCACTTCTGTTCTTTTCTCACCCCCCCCCTCTGGGAATGAAGAGCCCTAGGAGGAGTGGGGTAAGTGGGTGTGTGTCTCTAAACCCATCACTCCCAGCTGGACATCTGATGCTGCTCCTTAACAATCCTTCCTCATTCCTGCGTCAGGCAAACCCCCCTCAGCTTCCTTATCTGTGCAAGGAAGACACAAACAGCAGTGGCCCATGTGAGGATGATGTGAGCCAAGCCGTTACTATTACAGGTTTCGTAGTCGTAACTATCATTAATGGTGAAAGTGCTGAAGGATATGAGGATTGGGGGAACTTGCCTCCTTAACTAAGCCTGCTTCCGGCTACTGCCAACTTGCCTCATTCACCTGTGGCCTTGCAGTTGGCCTGGCTGAAGCAGGCTGAGGCCTCTAGGTTGCGTTTCAAGGTCACATGAGCCAAATCCCATCTCCTGTACACAGTTAGGATGCAGGGGAGACCGGTCCCTCCCAGGTTCTCCATGATGCTGATGCAGAGGAGTGTCTGTCCCTGTTGGGAAGGGGCTGGGAAGGGAGAGAAGTCTTTTAGGTCTTCGGGAGGGAACGAAGTGTCTAAGCTTAGCGTCAGGCGACTGGTGGAGAGGAAGGGGGCAGTGGAAGCTTTTCTGGTTATCGAACAACCCGATAAATGACAGAAGCCTCCTATGAAGGAAGACATCTTGTCTCCAGGAATCCAGCTGCCAGATGGAGAAATTGCGTTCCTTCAACAGCTCTTCCGGGGCTGAACAAGACGTTGCTGGCACTTTTGGAACCCACTTCCCCCACCCCTCCTCCCCGGTGCTCATGTGCAGCTGGTGAGAAAGCTGGTGTGACAACATGTAAGGAAGAGCTTCTCAGGCCGATTGACAGCCGGGAGATTGTAAACCACTCGAGGGCTGCATCGAGCCAAAGCCACGGGCCGGAGTGCACAGGGCATGGAAAGTCTGGTCCCACCCGAGTGTGGGGCCTTAGGAATTAGCAGGGTTCAAGGAGGAGATAGAAGGGGGGAAACAGATGCAAGGGAGCTGACATGTATACTGGAGGTTACCAGAAAGTTCCAAACTTTCAATGACTACCACTGCTAGGTTATCAGGTGAGCCCTCAGTGAACGTGTGCTTTTAGCTCACCTCAATTCATCTCTGCAGGCCGTGCCTTTCCCCCCTTCTTCCTCTTTTTCTCTTTTTCATTTCCACTTTTAACTTTTGCTGATCATGCTGTACTGAGTGACTGGGAGCTACCTTCGGACCTTTCGGGCACAAGGCGGGGCATGAATAAACACACATCTGCATAGTGCTTTATCATCTACAGGTGTTTCTCACATGACCCCGCTCCAGCCCCATTAATTGCCAGGTAGAGGTTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTTCCCCTCCGACCTTCAAGAAATTCGAGGAGGAACCATCAGATTGGACTTAGAGCTGAGTATCAGAGAGCCTGCTTAAGATGTGCAAAGTCCTGGGACTCCAGGTCTCCCTCTCCCAGGACTGGGGTGATGGCCCAAGTGGCAGTGTACTTCCTGTGCAAATATGGGGACTGAGTTGGATCCCTGGTACCCATGGGAAAATCTGTGTGTGGTGGCTTGCATTAGTGATCTCAGAACTGGAAAGGGGGAGATAGGTGGATTCCTGGGGATTATGGCCATCCGTCCAAGCCTCCACAGTGAGCTCCAGGAAGTCCTAGTGAGAGAACCTGTCCCAAAAACAAACAAACAAACAAACAAACAAACAATCAAACAAACAAACAGCCCAAGCCAGGAGCAGGAGAGATGTTCATCAGTTAAGAACATTGCTTGTTCTTCCAGAGGTCCTGAGTTCAATTCCTAGCACCCAAATGGTAGCTTCCAACCGTCTAAAACCGTCTGTACTCCCAGTGTGTTCTTACATCCTCTTCTGGTGCGCAGACATACATGCAGACAAAACACCCATGTACATGAAGTAAGTAAGTAAGTGAAAGCCCAAACAAACCAGCCAGCCAGCCAACTCACCAGCCAGCCAGCCAGCCAGCCAGCCAAACAAACAAACAAACAAACAAACAAACAAAAAGGTGGGGTCTGGAGAGGTAGGTAGCTCAGTAGTTGAGAGCATTTGCTGCTCTTCTAGAGGACCAGAGTTTGGTTTCCCAGCACCCATGTCAGGTAGCTCACAACTGTCTGTGACCCCCGATTCAGAGGAATCTGATGCCTCTGACCTCTCTAGGCACTAGATCTCCTACATGTAATTAAAAAATGATAAAAATAAATCTTTTTAAAAAAGCCTAAGGTAGATAGATGGGTCCTGAAGAGTGATTTTCAAGGCTGACATCCGACATTCACACGCATGCTGTCCTACACGCACAGACACACAATTATAAAGCTTACACAAAGGGCATGCCTGTGGTGAAGAGAATCCAAGGAATACAGAGATTGCTAGAATTCATTCCCGTACGTATTCTCCAGTGGTCACGACTGTCAGTGGGGATCACTAGAACAGGCCGGGGCTGTATCTTTCCAGACTCTTCCAAAGACAGGAGTCGTTCCCTACAGAGCGAGTGTGGACTGCAGAGCTCATATCCGCAGCATGCCAAAATAACACTTGAGCATGTGGGATTAAATACAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACCCCTCAACCCCTGCTCACACACATGCAGTATGCCTCAGGCTCAAACCCAGGGCTCGTGTGTGCAGAAGCCTCTACCCTTAAGCTCTTCCCTCAGCTTATACATGTGCTTTACACTCACGAGATTGGAGGTTGCTTTTTTCCCTTGCACATTTTTTTTTAAATGAGGGTTCATAGACAAAGGTGGATTGTGTCTTTGAGATGCTATGTAGCTCAGGCTGGCCTCCAACTCAGGATCCTCCTGCCTCAGCCTACTGATTTCTAGAATTATAGGTGTGTATTGCTACTGACTCAGAAGTAGATGTTTGGACGGGTGAAGACACTGGGGTAAACTAAACAATACATCGAGCATAAAGATAAAGTGATTGGCAGGCTTTGTACTCCTGTCCCCTAACTCTGGACACCAATTCTTTATGTCCCGGGATTTACTTTGCTATAACTAGGTCGCGGAGAACTGTGGGAAGCTCTTTATTTTTGAGACAGTGTCTCAGTTGATAGCCCAGGTTGGCCTTGAACCCCAATCTTCCTGCCTCATTATAGCTGGATTTAGAGATGTGTACCACCATGCCTAGCTCTGGAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACAAATGGGGGGAAGGGAAGAGAAAGGGGAGGGATATTTCTGCAGGTGATGTAGCCTTGACTTCCACACATTAAAAAGACTTAGGCCAGTCCCACTGACTCTACCCACTCTCCCTCCAG
Seq C2 exon
GCCCTCGGCCTTGACTGATGCAGGGGTGTGGAAGAGCCAGCAGCACTGATTGAGTGACCAGGCGGATGAGCCCCCAGGAGAGTTCTGTGCAACCTTTCCAGTTCCTCCTGCTGGTGGGGATCCCTGTGGCCAGTGTTCTTCTTCTGGTTCAGTGTCTTCGATGGCACCGTTGTCGGTGGCCGCCAGGGTCCTGCCAGAAGCCGGATGACCCAGAAGAGCCAGTGTCCCCATCTACTCCATTACCAGAATATGAGCTCCCAAAGCAGTGCCAAGCCCCCACGCTACCGGAGGTAGCTGCATTCTATCAGGAACTCCACATGCCTACCCGGGGCCAGACCATCACCCGACAGCTGATGAACAAGCTGCTGGTGTTTTCTGCTCGAGAGGTAGATCACCGCGGCGGATGCCTGATGCTGCAAGACACGGGCATCTCCCTGCTCATCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601:ENSRNOT00000073556:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0079115=ZU5=PU(28.3=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]