HsaINT0177891 @ hg19
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:41002429-41006938:-
Coord C1 exon
chr6:41006901-41006938
Coord A exon
chr6:41002875-41006900
Coord C2 exon
chr6:41002429-41002874
Length
4026 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GACCCCTTCTTCCCCACCAGGCC
3' ss Score
9.96
Exon sequences
Seq C1 exon
AACTGGACCAGCCAGCAGCCTCTAAGAGCTCCTAGACG
Seq A exon
GTAAGTTGAGCACCCCCTTGGGGCAGCTGGAGAGGGGATGGGCATTGTGATGGGGTTACCTGGAGCTTCGGGGGAGGAGCCAGGCCAGCTTAGCCTGCCTGCTGGAGTGTAGGGACCCTCTGCTGGAGGAGGGGAGGAAAATGGGACTTGGCCAATGGGTATGAGGACCACTGGGATGATTCTGTGTCCTGCGGAAATGTCTACTATACTAACAAATGCCATTCATGACTTGGGTTTGGACCATCCATCCCAGTACTTGTTATGTTCTGCAGTAACTGGACATCTATCAGGTGTTGGGGAGGCACAGGGAGAACCAGTGAGGTGGAGGAAAGGTTGAGAGTTTTCTTAAAGGGTATGAGCAGAACTTTGCAGCAGGAGTTTGGATCTTTGTGCTGGAGGATGCAACTGCCTAGGGACAGGTGATGGCAGCATTCTAAAGGACTCTCGTTTCGGGGACCCGCTACCCAGGGTGATCTGGGGTCTGGAGCAAGACAGACTGGAGGAGTGGGTAATGAGGAGTCCAGGCATGGGGTTGGGATGCCCCAAGTCACACTCGAATGGCTGCAGTGCTATAGTTGCCATTCAGCAAGACTCCGGACCTTTCCCCATTCTGGAGCCAGAGGGAGGATGCAGTGAGGGCCAGGGCAGCCTGGAAGAGCAGTCACCCTGGGAGAGGCCCAGTGGGGCTTTGGGAGTGGTGCATGCCAACTTCTCCAGGGTCGGAGGTTGAGCCAGGGGACTCTACTGCACCACCCAGTGAGGTGCACCTCACTGGGGATCTGGACTCTGGTCTTTGGTGGCCCCAGGAAGGTTACTGCTGTGTAAGCGAGCTGGGGCCCCTCCTTTCATCCCTTTAGCAATTCCATCCCCTGCCACTGGTACCTTGGTAGGTGGGGGTGTGGTGTAGTGGGGTGGGTATTACCACATAACTGAGGATGTAAATTTAGGTCCTTCTATTTGTCTTTACTTCATTTTTGCTTCTTTCTCTTCCAACTTTATTTCTTCTAGAGAAGGAAAGGAAGATACTTGGGGAAAAGAAGGGGTGGAGAGAGAAAGGGGGTATCTCTGGAAGTCCTTGTTCGTCTTTGCTCCTCCTTCCTGCCTGTCTTCAGTTGTTTAGTAATTCCCTATCCATCTTCACTGTGGGGAGAAAGCTCGGATTCCTTATCTGTGAAATGGAGATAAAAATAACACCTCGCTCCTAAGGCTGCTGTGAGGATGAGATGAGACAAGCCATGGAGAGTGCTTTAACACAGTGGCATTGAGTAAAGCTCTGCGAATGTTAGCTATTGTTATTACAGTTGGAATTATAATTATTACTAATGTGAAAGAACCAAAAGAAATGATGGGACATCAACGGTAGCTTGCTGCTCCAACCCCCTTCCCATCAGCTTTGGGACACTGCCAATTCACTGATTCACCTGTGTGCCCTCCAGGATGCCTGGTTGAAAAAGGCTGGTGCATTGTCTGCTGGGTTGGCTCTTTAGGCAAAGAGAACAATGCCAACCCCCGCTTCTTATTCACACTTTCAGTGAGGACATGGGAGAAACAGGTACTGCCCCAGTCTTCAATCCTGAGGATACAGTGGAGGTTCTGCCCTGGTCTAAGAGGCACTAGGAAGGGGCTTCAGTTTTCATGGGTCCTGAGGTTGGAAGGAAGAAGGTGGGCCAAGCCTCAGTTCCAGGTGGGTAGTGCAAGTGAAGGGCGTGGGGAGGACTGGATACTGGAAGCTCTTCCAGTGCAGCCTCTAGTGAGTCAACCAGAGGGGCCTCCCAGGGCTCTGAAGGAGGACGTTGTGCCTCACAGAACTCAGCTACCAAGCCAATGAATTCCATTCCTGCAGAAGCTCCTTGAGAGCGGAATAAGACGTCATCTTTGGCAGGATTGAACTTCCCACAGTGTCCGATACACAGCCGGTGCTTAGAAAATGTTCATTTGAGTGGGAAAATCACACATGACAGCACATAATCAAGAGTGACTCAGTATGGTGGGATGGCTGTGGAGAGAGATTTCGCGAGCTGGAGGCTGTCAAAGGCCGGTGCACCAGCGGGAGGCACTATTGAATGGGAGGATCCACGTAGGGAGAGGAAACAAGTGGGGAGAGCAAGTGAGTGGAGAAACAGAAAACAGCATGAGCAAAAGCCAGAGGCTAGAATTAAGCAGGTGTGGGGAGCCTGGGCAGGCTACAGGGCAGGCGTGTTGGAAATTGTAGGGGCTGGAAGAGGGGAAGTAGGAGGAGGCGGAGGTGGGTTCTGGAGGGCCTCAGGAAGAGCTACTGGGAAGTCTCAGCCTGTGGCCTGGCTGGGTAGCCAGGTGAGCAGGAGGTGAGTGTATGCTTTTGCCCTGCCTCATTCCAGCTTCACTGTAGGGCTGCATCTTTGTGTTTTGTCTTCTTCATTTTTTTTTTTTTTTGCTTCCACTTTTAGCTTTTGTTGTTCTTGTTGTATGTTGCCTATCCCTGTGAGCTACCTTCAGGCCTTTCTGGCAGAAGGAGGGGCATAAAGAAACACATACATTTGGACAGTGCTTTCTCATCTACAAATACTTTTCACATGACCTTATGCCATCCTCACCATTACACAAAGAGGCACTTTTTCCCCACTTTTAATAGCTTCAGAAAAGAATTACAAAGTTAATACAAACTACATGCTTGATGTGAAAAATTCAAAGTACAGAGAAAAGGATTTAAAAAAATACAAAGTTTTTATTCACACCTTCCACCTTCTCAATTTGTTGTGACTCATGGGAATAGTTTGGGGGTGTGTCCTTCCAGACCTGCACAGTCTAAGACCGGATTCATTAGTACACGTGGCTACTGGGCACTTGAAATACAGCCAGTCCCAAGTGAGCTGTTCTGTTCATATAAATTACACATGGATTTCAAAGACTGGGTATGAAGGAAGAAAGTAAAAATATCTCATAATTTTATATCGATTACCTGTTGAAATAACATTTTGAATATATTGGGTTAAATAAAATGTATTAATTTCTCCTGTTCTTTTTAATGTGGCCATCAGGAAATTTAAAATTACATGTGTAGTTCACATTACATTTTTATTGTACACCACTGCTCCAGACCTTTCTCTATACCTTTACATTTCCATATATGCACCCATAAATATGTATCTATTTATATGCAGTTTTGTTTTTCACATTAATGAGCTCAGAATATTTTATCTCTCTGCGACTTGCTTTTTCCACTTATAGATTTTTTTGTATCAGCACTTGTAGATCAAGGTAGATATTTGGACAGATGAGGAAACTGAGGTACATTAAGCAGTATTGAGGCAGGAGGTGGGATTTGATTCCAGGCCAGATAGAAAACTGGCTGAAACAGGGAAAAGGCACCAAAAGCACCTCTCCATAAGACATGCCCACCAGTGCCATGACAGTTTACCACTGCCATGGCGATGCCTGGAAGTTACTGCCCCTTTCCATGGCAGTGACCCGAAGCTACCACTCCTTTTTCTAGAAATTTCTGAATAACCCACCCCTTACTGCATGTAATTAAAAGTGGACATAAATATGATGGCAGAAATGCCCCAGAGCTGCTACCCTGGGCACACTGCCTAGGGTTAGCTCTGCTCTGTAAGGAGCATACCTCTGCTGCTGCTATACTCTGCCACTTTAGTGAAAGTTGCTGTCTGACACCACTGGCTCACCCTTGAATTCTTGCCTAGGTGAAGCCACAAACCCTCCCAAACTAAGCCCCAATTTTGGGGCTCTCCTGCCTTACATCAATATGATAAGTTTACCCAGCCACAGTGACCAAGGTGACATTTGAACTCATGTTCTCTAACTGTAAACCCAAGCTCACTCTGCTTCAGAACAGTTTACCTTGATGTATTAGGTCACGGGGAGCCAGGGTAGGTTCTCGAGTAAGAGAGACAGGTTAAAAGAATTGGTGTGACTAAAGTGTGCAGTGTGCGCTGGAATGAAGACAACTTGCAGCTATGTGTAAGCCAAGCCTTGACCTCCACAACTTAAAAGGGCTTACCCTGACACTGACCCCTTCTTCCCCACCAG
Seq C2 exon
GCCTTTGGCTTTGGCTGGCACAGGGGTGAAGGAGAGCCAGCGGCATTGAGTAACCAGGCGAATGTGCCCCCAGGAGAGTTCATTCCAACCCTCCCAGTTCCTACTGCTGGTGGGGGTCCCAGTGGCAAGTGTCCTCCTTCTGGCCCAATGCCTTCGATGGCACTGCCCTAGAAGGCTGCTGGGGGCCTGCTGGACACTGAATGGTCAAGAGGAACCAGTGTCCCAGCCTACCCCCCAACTAGAAAATGAGGTCTCAAGGCAGCACCTGCCAGCCACACTGCCAGAGATGGTTGCCTTCTACCAGGAGCTACACACACCCACTCAAGGCCAGACCATGGTCCGCCAGTTGATGCACAAACTGTTGGTGTTTTCGGCTCGAGAGGTGGATCACCGCGGCGGTTGCCTGATGCTCCAGGATACAGGCATCTCCTTGCTCATCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-UNC5CL:NM_173561:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.101
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0079115=ZU5=PU(28.3=21.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)