MmuINT0170613 @ mm10
Intron Retention
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 family C-terminal like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48454901-48459984:+
Coord C1 exon
chr17:48454901-48454972
Coord A exon
chr17:48454973-48459538
Coord C2 exon
chr17:48459539-48459984
Length
4566 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TCTAACCACTTTCCCTCCAGGCC
3' ss Score
10.14
Exon sequences
Seq C1 exon
AGACCTCTCTGTTTCTTAGAGAGGGAACTATTGCTTCTGGACGGGCCTAGTGGGTGGCAAGCCGACATTAAG
Seq A exon
GCAAGTATCATCTGGGGCCGCAGGAAGGGAATGGGCATGCTGCGGGGTCCAGGGAAGAGCTAGGGATGAGCCAGGTCTGCCACCTTGTAGGATGGCACAGGGAGAGAAGGAAGGGGGTCTTGAGGAAGGGCCAATGCTGACGGGTGTCAGGAGCAGGAGGATGGTACTGTGTTTGGTGAAAATGTATAATGTGCTCAATGAAGAGTGCTCAGGAACTGTATGTGGCTTCCATTCATTCTGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATGTTTCCTAGTACTGGGGGTTGAACCTAGAGACTTGGGTGTACAAGTGTTCTACCACTGGGCTACATTCTCAGTCCTCGTTTGACTTTACATTTCTGTTTGTTTGTTTGTTTGTTTGAGACAGGGTCTCACTATGTAGATCTGGCTGGCCTGGAACTCACTATGTAGAACAGGCTGGCTTCAAACTCATAGAGATCCTCCTGCCTCTGCCTCTCAGGTGCTGAGATTAAAAGTGTGATCCACCATGCTGGGCCTTTACTTTTCAAGACAGGCTCTTACAGCATTGCCCAGGATGGTCTTGAATTCCCTTGCTATGTTCAGGCAGGCTTTGAACTTGTGATCCTCCTCCTTCAGCCTCCCAGGTAGGGAGCATTACTGGCTTGTGCCACCAAGCCCAGATCAGGCTTCTACTTACTACTGTCTTTGAAAAGCACTTGGAACTCCATCAGGAGGTGTGGTGGGAAACAGGAAGGTAGGGAGGGTTGAATGTGCACAAATATAAACAGATCTTTGCAGCAAGAGTCTGAATCTTTGTTCTGAAGGCAGGTGACGGCAGAATTCTAATGTCCCTTGTTTAGGGGACATGCTACCCAGAATGCTCTGGACTCTGCAGACAGACAAGTTGGAAGAACTGGGTTCTGAGGAGTCCTGCATGGATTTGGAGAAGCCAGGGAATTTGTAGTGCTGTGGACTTGTCTCCTACCTAAACTTTGGCTCCTTTCCCTTCATGGGATCAGAGCGGGGGATGGGGTGAGAGCTAAGAAAGTCTGGAGGAGTGATCAGTTGGACCCCAGGCTTGAGCTGGGGAGGAGTTAACCTGCTTTAGGACAGAGAAATGAGCAGGCTCCCTTGAGAGGCCCGGGGGACTGTGGGAGTGGTATACACCAACTTTCCAGGTGAGGCAGCTGGGCAAGGGGACATGGCCCAATGGGCTGGAGGGGATTTGGACTCTGGTCTTTAGAGGCCCCAGAAGGCTGTTGTTATAGTAACAGAGTAGTTCCTCCCATTTCATTCCCTTGTATCTGCCCCTCCCTGCCACTGGAACCTTAGTGGGCAGACACTAATGCCATCACTTACATGGGACCCAGAGATGCCTTTATTCCATTTAGTTCCTTCTAGTTCCCCTTCCTCTTCCTTCTCCCCTTCCTTTCCACCATTTCTTTTCCTCTTCTTCTTTCTCCTTCTGTCCTCCTCCATGTCTTCCCCCTCCTCCTTTTATTTTCTGCTTTCTTGTTTTTACTTATTTATTTTTATTTTATGTGCATGAGTGCTTTGCCTGAGTGATTATATCGTATGCACATAGGCCAGAAGAAGGTGTCAGATCATTTGTGACTGGAGTTACAGATGGCCATGGGCCCCCGTGTGTATGTTCAGAATCAAACTCATGTGTTCTGAAAGAGCAGCCAGTGCTCTAACCACAAAGCCATCTCTAGCCTCTTTCTTTTTATCTCTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTCCTCCTTCCCATCCTCCCTCCCCTCTTCCTTCCTTCCCTCCTGCCTGCCTTCCTGCTTTCCTTTGAGACACAAACTCATTATGTGTCCTTAAACTCGTAATCCTCCTGCCTCGGCCTCCCTAGTGCTGGTATCCCAAAGCAGAACCATCTTTCTCCACTTCTGTTCTTCCCTCACAACGTCATTCTCTCTCAGAGTGGGAACGAAGAGACCTAGAAACAAAGAAGGAGTGGGGTTACTGGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCTAAACCCACCACTCCTGTTCATCTGCTGGTGTTCCTTAGCAACTCTCCCTCATCCCTTGCAGCAGGCAAAAACTGCTCAGCTTCCTTATCTGGGCAACGAAGACACAAATGGCACCAGCTCAGAGGCCCATGTGAGGATGACGTGAGCCAAGCCGTTACTATTACAATTTCCATAGTTGTAACTATTGTTAATAGTGAAAGTGGTGAAGGACATGAGGATTAAGGGAGAGCTTGCCTCCTTAACTAAGCTGGCCTCCAACCGCTGGCGGCTTGCTTCATTCGCCTGCGGCCTTGCAGATGGTCCGGCTGGAGAAGGTTGAGGCTCTGGCCTTCTAAGTTGTATTTCAAGATAAAGTGAGCAAAGTCCCATCTCCTGTATACATCTTCAGTGAGGATGCAGAGGAAACAGGTCCCTCCCGGGTCCTCCATGGTGATGACGCAGAGGAACGTCTACCCCTGTTGGGAAGGGACCGGGAAAGGGGAGAAGTTTTTTAGGTCTCCAGGGGGGAATAAGTGTGAGCTTAGCATCGGGTGACTGGTGGAGAGGAAGGGGGTAGTGAAGGCTTTTCTGGTTAGTGCGCAACCCAGTGGATGACAGAAGCCTCCTAGGAAGGAGGACAATCGTGTCTCCAGGAATCCAGCTGCCAGATGGAGGAACTGCATTCCATCAGCAGCTCCTCCAGGGCTGAACGCGCGACATTGTTGGCACTTTCAGAGCCTCCCATGGTGCCTTAGATGCAGCTGATGATCAGAAAACGTTCGTTTCAGTGAGAAAGCTGGTGTGACAACGTATAAGGAAGAGTTTATCTCAGGCCCATTGACAGCAGAGAGGTTGTAAACCACTCAAGGGCTGGGGCGTCACGGGGGCTGCAAGGAGCCAAAGCCACGGGCCGGATGCACTGGGCATGGAGAACCCAGTCCCGCCTGTGTGTGGAGGTGTTAACAGGGTTCAAGGAGGAGATCGAAGGGGTGGGAACAGATGCTTGGGAAGCTGACATCTATACTGGGGGTTACCAGAAAGTCCTAAACGTCCAATGGCTACTGCTGCCGGGTTATTGGGTGAGCCCTCGGTGAGCATGCGCTTTTGGCTCACCTCGATGCAGCTTCTCTGTAGGCCCCACCTTTTCCCCCTTCTTCCTCTTTTTCTCTTTTTTGCTTCCACTTTTAACCTTTGCTGATCATGCTGTACTGAGTGTATGCCTGGGAGCTACCTTCGGACCTTTCCGGCAGAAGGAGGGGCAAAAATAAACACACATCTGGGTAGTGCTTTATCTTCTATAGGTGTTTCGTACATGACCTCACTCCAGGTTCATTAATTGCCAGGAAGAGTTTTTTTTTTTTCCTCCCACCTTCAGTAAATTCAAGGAGGAACCATCAGGCTGGACTTAGAGCCGAGTAACAGCCTGCTTAGGACGTGCAAAGTCCTGGGACTCCATGCCTTCCTCCCCTGCACTGGGGAGATGGCTCGAGTGGCAGTGTGCTTCCTGTGCAAATATGAGAACCTAGTCGGATCCCTGGTGCCTATGTAAGAATCTGGGTGTGGTGGCTTGCATTAGTGGTCTCAGTACTGGAGAGGGGGAGCTAGGTGGATCCCTGTGGATTATGGCCATCCATCCAAGCCTCCTGGGTGAGCTCCTAGTCCTAGTAAGTGATACTGTCTCAAAAAAAAAAAAAAAAAAAAAAACCAAAGAAACAAAACAAAACAAGTCCAATCCAGGGGCTGGAGAGATGGCTCAGCAGTTGAGAGCATTGCCTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACCTCATGATGGCTCCCAACCATCTGTAACTGTCTGTACTCCTATGGGATCTTATTCCCTCTTCTGGTGTGCAGACATACACGCAGACAAAACACCATGTAAATGAAGTAAGTTCCCAAACCAACTAACCAACCAAACGGAAAATGAGGTGGGGTGTGGAGAGGTGGCTCAGTGGTGAAAAGCCCTTAACCACTGAGATGCTATGTAGCTCACTCTGGTCTCCAACTCAGGATCCTCCTGGCTCAGCCTCCCAATCACTAGGATTATAGGTGTGTATTGCTACTGACTCGGAAGTAGCTATTTGGACAGGTGAAGACACTGAGGTAAACTAAGTGATAAGACAAGCCTAACAGATGCAGTGATTGGCAGGCTTTGAACTCCTGTCTTCTAACTCCGAATCCCAGTTCTTTATGCCCAGGGATTTGCTTTGCTGTAACTAGGATGTGGAGAACTGTGGAAAGCTCTTTATTTTCGAGACAGTGTCTCAGTTTGTAGCCCAAGCTGTCCTTGAACTCCAAATCTTCCTGCCTCATAAGCTGGAATTAGAGATGTATACCACCATCCCTAGCTCTGGAAGGTTCTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGGGGTGTGTACAAATGGGGGAAGAGGAAGAGAAAGGGGAGGGGCCACTGACTCTAACCACTTTCCCTCCAG
Seq C2 exon
GCCCTTGACCTTGGCTGGTGTAGGGGTGCGGGAGAGCCAGCAGCATTGAGTGACCAGGCGGATGAGCCCCCAGGAGAGCTCTGTTCAACCTTCCCAGTTCCTCCTGTTGGTGGGGATCCCTGTGGCCAGTGCTCTCCTTCTGGCTCAGTGTCTTCGATGGCACTGCTGTCAGTGGCTGCCAGGGACCTGCCGGAAGCTGGATGATCCAGAGGAGCCAGTGTCCCCATCCACTCCATTACCAGAGTATGAGCTCCCGAGGCAGTGCCCAGCCCCCACACTACCGGAGGTGGCTGCGTTCTACCAGGAACTCCACATGCCTACCCAGGGCCAGACTGTCACCCGCCAGATGATGCATAAGCTACTGGTGTTTTCTGCTCGAGAGGTGGATCACCGTGGTGGATGCCTGATCCTGCAGGACACAGGCATCTCCCTGCTCATCCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592:ENSMUST00000074574:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.163
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0079115=ZU5=PU(28.3=21.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types