RnoINT0161647 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257585747-257586109:+
Coord C1 exon
chr2:257585747-257585916
Coord A exon
chr2:257585917-257586014
Coord C2 exon
chr2:257586015-257586109
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TCCTGTCAATGATGTTTCAGGTT
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAAGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCGTGTGGCGAAGCCTACGCTCCACAGGGGTGGATAGCTTTCTTCATGGAGTACGTGAAGAG
Seq A exon
GTGCGTGTTTATTTCCTTTGCTTGGATTGATGGTTGGTGCTGCTGCTTCTGCTGTACTAGCAGAACACTTCCTTTCTCTCCTGTCAATGATGTTTCAG
Seq C2 exon
GTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.6=100)
A:
NA
C2:
PF0044324=UCH=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGTCCTTGCCGATTCC
R:
CCCAAAACCAGCTAGGGACAC
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]