RnoALTA0043844-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257585747-257586109:+
Coord C1 exon
chr2:257585747-257585916
Coord A exon
NA
Coord C2 exon
chr2:257586039-257586109
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
GTTGTCTCATGTGTCCCTAGCTG
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAAGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCGTGTGGCGAAGCCTACGCTCCACAGGGGTGGATAGCTTTCTTCATGGAGTACGTGAAGAG
Seq A exon
NA
Seq C2 exon
CTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-19-22,19-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.6=100)
A:
NA
C2:
PF0044324=UCH=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCAAAGCAGGGTCGTGTG
R:
GCAAGGTTACTACTGGACCCC
Band lengths:
105-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]