GgaALTA0004713-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19702733-19703111:+
Coord C1 exon
chr8:19702733-19702905
Coord A exon
NA
Coord C2 exon
chr8:19703041-19703111
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTTGTCTCATGTGTTCCTAGCTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
CTGTCTGTAACCTTGGAGACTTTTCAGGATCTGTCCTTGCCAATTCCAGGTAAGGAAGATCTTGCTAAACTCCATTCTGCAAGTCATCAGACATCTCTAGTCAAAACAGGGTCGTGTGGAGAAGCATATGCCCCCCAGGGCTGGATAGCATTTTTTATGGAATATTTCAAAAG
Seq A exon
NA
Seq C2 exon
CTGGTTTTGGGGTCCAGTTGTAACCTTACAAGATTGTCTTGCTGCCTTTTTCGCCAGAGATGAGCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-20-19,20-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
NA
C2:
PF0044324=UCH=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAGAAGCATATGCCCC
R:
GCGAAAAAGGCAGCAAGACAA
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]