GgaALTA0004713-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17901353-17901731:+
Coord C1 exon
chr8:17901353-17901525
Coord A exon
NA
Coord C2 exon
chr8:17901661-17901731
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTTGTCTCATGTGTTCCTAGCTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
CTGTCTGTAACCTTGGAGACTTTTCAGGATCTGTCCTTGCCAATTCCAGGTAAGGAAGATCTTGCTAAACTCCATTCTGCAAGTCATCAGACATCTCTAGTCAAAACAGGGTCGTGTGGAGAAGCATATGCCCCCCAGGGCTGGATAGCATTTTTTATGGAATATTTCAAAAG
Seq A exon
NA
Seq C2 exon
CTGGTTTTGGGGTCCAGTTGTAACCTTACAAGATTGTCTTGCTGCCTTTTTCGCCAGAGATGAGCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-26-33,26-32-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.9=100)
A:
NA
C2:
PF0044324=UCH=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAGAAGCATATGCCCC
R:
GCGAAAAAGGCAGCAAGACAA
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]