RnoINT0162616 @ rn6
Intron Retention
Gene
ENSRNOG00000050430 | Vav1
Description
vav guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:3951]
Coordinates
chr9:9637189-9637610:-
Coord C1 exon
chr9:9637478-9637610
Coord A exon
chr9:9637225-9637477
Coord C2 exon
chr9:9637189-9637224
Length
253 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AGGTGTCATCCTTCAGGGACTGG
3' ss Score
-29.85
Exon sequences
Seq C1 exon
GTATGCCTTCCTGCTGGACAAAGCACTGCTCATCTGTAAGCGCCGCGGGGACTCTTATGACCTCAAGGCCTCAGTGAACCTGCACAGCTTCCAAGTTCGGGATGACTCTTCCGGGGAGCGGGACAACAAGAAG
Seq A exon
GTGGGACTCTGTCACCAGGACTCGGCGGTCCAGGAGCTGGGCAGCTTGGCCTTGGGGTTGCCTGCATGTGTGTGTGTGTGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAATGTGAGAATTTAACTATTTGCCCTTCAATCTTTTCATTGAAAAAATCCGTGTGCGAGTGGAATTCAGAGTCAACCTCAGGTGTCATCCTTCAGGGAC
Seq C2 exon
TGGCCATCTACTTTTTTTTTTTTTTGGAGACAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050430:ENSRNOT00000073294:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.8=100)
A:
NA
C2:
PF0016924=PH=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]