RnoINT0162688 @ rn6
Intron Retention
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212408396-212410500:+
Coord C1 exon
chr2:212408396-212408464
Coord A exon
chr2:212408465-212410396
Coord C2 exon
chr2:212410397-212410500
Length
1932 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ACAATGTTTTCTTTTCTAAGGAC
3' ss Score
7.84
Exon sequences
Seq C1 exon
TATTTCATGGCACCATTGAAAAGATTTCTGACAGCGGCGGAATTTGATTCAGTATTTATCAACATTCCT
Seq A exon
GTAAGTAAAGTTGTGACAAGTCAAGTGTGTTTCTAGAAAGTCTTCATGTTTTTAGTGGGCTCGTTATCCTTCCTTTACCACTGTCTTTGGGTTTTCAATGATTTTTTTCTTGCTTCCCCATTTATCATACCCTTGCTCTTTTGAAAACCTGACATTGTATCTTTAAGAGGTCAGTCAAGAGCATGTGTTCAGAAATGGATATGTGAGATTCGTGTATTAGCTATGCTTGGTTGTTATGCAGCAGTGCTCTCAGTTACATAACTGTGATGTTACTGTCTGTCTGGCTTGCTCTTCCCTGCTGTGGCCCCAGGAATGTCACTTACCTCCCTCAATTCCTCTACCATGGCCCCTGCCCACTGTCGGTTAGATCAACAGCTTCTGGTTGTGCCAATTTCCACTTGAATTTTGAATTTGCAATTTTCTCTCCTCTTCCTCTCTCTCCTCCTTCTCCCTCTCCACCTCTTCTTCTTCCTTATTGTTTTATAACTGAAAGAAAATGTTTACAAAAGCAACTGGAGACATAACACTAAAAACCCAAGCCTGCACATTTTAGGAAGTAGGAACCCTGAAACCCTATCGTATGCTCATTTGCCTTGTTCGATAGCACCTCCTTCTTCTGGCATGAATCCAGCAAAATACTAGAGATGGCATATTCACCTTCAAAGTTCGGCCTACACTGAACACGTTAACTGCCATGTTTCTCTGTGCTCCAAGGTACACGAGAAGAGATAGCAGAGAATCGGTACCTCCATTCAAATTTCCTCATTCTCCCTTTGTGACTCACACTCCCTGGCTGCTGAAAATGACTTGCCAGAGTTCAAAATGAAATTCAGACTTTTGAGTTGCTATCATAAACCGTCTAGCACAATTTAAGTGCTACATGTTTGTGTCACTAGTGGTCTGGTGTTAAGTAATTTGGTCTGATTCTCGTTAGCTTACCACTAGGGTGCCGCTAATTGACCCAAGTTCAGATCTGCCTCTCTGTGTCCCAAGGACACTACTCATTACTTTAGTCCATCAATAAAACAGTGAGCACTTGATTAGTTTTATTTACAAAATTTACAGTGATTATAAGATTAAACAGCTGTGGGGTTTTTTTTTAATTCAAAGAATAAATTGACCTATAATAGGAAGTACGGTTTCTGTATTCACTGGACAGGGATATTTCTATCTGAAATTGCTGTTTCCCATGCCGACATCTTTCTCCTTCTTGTCCTGCTTCCTCCTCTTCTGCTTTCTCCACTTCACCCCCAACCTCACTATCTTTTTCCTCATTAATTAAAGTTCATTTAATTAATGAACTTTATATCCCAATCACTGCCTTCCCATCTTGGTTCCCCCATCACACAGTCCCACCACCAGGCCCCTCTCACCTTCTCCTCTGAGAGGGTAGAGAAACCCCCTGGCTATCCCACCACCCTGGCACATCAAGTCTCTGCAGGGTTAGGTGCATTCTCCCAGCCCAGTTAGAGTAACATTATCCATATATAGGCACCAGCTTGAGACAGCCTCTGCTCCAGTTGTTTGGGATGCACATGAAGACCAAGTTGCACATCTGTGCAGGGGGCCTAGGTCTAGCCTATGTATGCTCTTTGATTGGTGGTTCAGTCTCTGAGAGGCCTGAGGGTCCAAATTAGTTGACTCTATTGGTCTTCGGGGCTCTCAATCTTTCCTGCAACTCTTTTATAAGACTCCCAATTTCTTTCACTGTTTGGATCTGATTCAGAAGGCTGCTGGTGGAGCCTCTCGGAGGACAGTTATGCTAGGCTCCTGTGTGCAAGCATAATGGGATATCATTAACAGTGTCAGGGATCGGTGCTTGCCCATGGGATGGGTCTCAAGTTGTGCCATTTATTGGTTGGCCAGTTCAACAAAACAGTCTCTGTTCCACCTTTGTCCCTACTTTTATTTCACAATGTTTTCTTTTCTAAG
Seq C2 exon
GACCTTGTAAAAGTTCATCGGAGCTTAATGCAAGAGATTCACGATTCCATTGTAAATAAAGATGACCATAACTTGTATCAAGTTTTTATTAACTACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485:ENSRNOT00000027813:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF143061=PUA_2=FE(29.3=100),PF0062115=RhoGEF=FE(19.1=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]