RnoINT0162960 @ rn6
Intron Retention
Gene
ENSRNOG00000004706 | Vit
Description
vitrin [Source:RGD Symbol;Acc:1564128]
Coordinates
chr6:1158184-1166041:+
Coord C1 exon
chr6:1158184-1158267
Coord A exon
chr6:1158268-1165855
Coord C2 exon
chr6:1165856-1166041
Length
7588 bp
Sequences
Splice sites
5' ss Seq
AGTGTTCGC
5' ss Score
-12.75
3' ss Seq
GCAATTCTGTTTTCTTACAGGTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
AGAGTAAGCCCCAAAAGGGAGTAACCTATCCATCAACTCTTACATATTCATCACCCAAAACTGCAGCGGCTAACGCAGGCAAGT
Seq A exon
GTTCGCGTGTTATTTCATCTGAGCCGAGCACGTAAGCACGGCGTCGCGCACTAGACAATGATATGGAAATTAACATCTTACCCAGCCAAGCTCCGCTGACCTCCATGACGCTTTAATCAATGCCAGGAACCTGGCACCCAAATCAATGTGACCAGACAGCCGTGGCTTGGGACTGGAATGTGGTTTCTGTTGTTGTCGTTCTCACAATTCGATATTGGTCCGCATCTGTGTCATTTCCATTCGGAGTGACTGCGGCCTTGAATTTTATTGCTTTGTTACTTTAGACCGTGATCAGACTTTATGCCTAGAAACATTTCCTGGCAACTCAAAGGGAAAAGGCTGCCTCTCCTTAGCGGTAAAGCAGAGGGCAGGAAGGAGAGAGGATGATGGGCCTTATCCACTAACAGCAAGCGATGCAAAATGCACGTCTCTGGGCCTTAGCCAAGCCAGCCTCCTCGGGAAGGCAGAGACTAAGAAATTGCTCTTCCTGAGTTTCTGTACTAAATCCAGAACAGTGCCCTCCATGGTGCTCTTTTGAGAGGTGCTTTGATTTCTCGCACAGTTTGTCTCATAGAACTCGGTGTTCCAGAAACATGGCAGAGAGTGGACTTGGTTCACGTCCTGCTTGTGGTTGTAGGCTGGACCTGGCTCTGGAATTTCAAGAGCTGGCGTTTCTTGACTATTTCCTGTGTGCAAGGCACTGTGACAGGATCTTTCCCAGGTTGTTTTTTAATCCCAATTCTAGCCAGCGCAAATTACTACCAATATACCCCGTTCTTAGCCCTAAGGCACAGTTTTGCAGACAACACAGTTTAGAGAAAGTTGTGTAAATTTCTGGTGACAAACAGCAAGGGGGTAGCAAAGGTCGAGAGTCAAACGCAGACAGTGAGGCTCCAAACACCAGTCAGTCGCTAAACTACAACTGACGAGCCTTCCCAAGCACACCGGAGGTCGCCTGTCTTCCAGCTTGCCACCGCCTCACCTATACCTCCAGTGACATTTCAATCACAGATGTGATCCTGATATATTTATTGAGTCGCAAGCACAGGTTCTGTCCCCATTCCTCACAGTGGGATGGTAGCTTAAGAACCAGATCTGGGGTAAGCCCCGTCTTCTTTCAGTGAGGACACAAGGAAGGAGTGACGAAGCTTCCAGATAGTCTGCTTCGTCCAAGTTTGCCACCTCTGCTCCTATGGTGATTTCTGAATAGGTGAACTGTGTAGATAACTGGTTTCTGCTTTATCGAGTCGAGTCGGCTCTCCTCCGGTCCCCACCCCTTTCTGGCATTCCTGGCAAACCATCCCAGGAACCAGCAGTCCCTGCACTCAGAACCCTGGGCTTCTTTCTCTCTGGACTGCCCTGAGGCCTGAGTTGCTCTGAGGTGAGGTTATCCTCTTTCTCCCTCTGCCTGGAGCTGTTCAGAGTCTTTGGACCAGGATGTGCTAATGGCACTGATGACCACAGAGATCTCAAGTGTAGAGAGAGTTGTCATAGCCAGGTAAGCCCCTGACTTCAGATACTCTCTCCCTTTTTACTCTGAGGAGAGAGTGCTTCTAGACTTCCAGAATATTCTCCTAGTGCCTCTGCAAAATCCTCTCCAAGGGGTCCAGGGTGTGCCTGTGACTGCTCTACCTCATGAAGACTGTCAGGAAATGGGTCGGCCATCTTTACCTGTTCTTTAGGCTTGGAGAGACCGCAGAAAGGAAGGAAGCACACTCTCACCTAAACACCCACACACAGTATGGCTCTTGGCCCCTCCTATTTATTTTTCTTGCTCCTTTTCTTCTGTTCACTGCTTGGGGAGACTTGGGTCTGCTGACTGCACAGATCAACCTATGGGAAACTCAGGGACAAAGTCCCTGGTATAGCAAGCATTGTTCAGGTCCTTCTGGCTTCAGCCCTCACTCCAAACCAAAAAAGGGGTAGGGCCACACACAATGTCCGGTGAGCACAGCTCTGAATTCCTGAACTGCCAGAGCCTGAGGCAGAGAAAGGCAGTATCTTCTGTGTTTCGGATAAAGGAGCTCACCAAAGAAGCCTTTAGCGATTTGCCCAAGGGTGTGACTGATCGTAACTGGTTCCTTAGAGACTGGTGGGTTGCAGCATCCTAAAGCAGGTAACAGTTGTAAAGAGAGAGCAGGGAGTCCATACAGGTAAGAGATGCTGCCTTGGCTTTTGGAACCCATGTGGTTTCAAGGCCCAGGTATTAGAGGCCTGTCCAAAGCTCCCCTTATCCACACCAGCCTTGGCCAAGCCGAATTGTCTCCACACAGCAAACCCTTATCTATATGCCTAGGTAGCATCTTTGACATAGCACAGTGAGTGCCTCCTCCTTCCATTTAAGTCTATAAAGTATGCAAAAGCCACAGTGGTAAAACACAACCATCATTGTTGTCACCTCTCCCCATTATCATACCGCCTCCACCTCCTGGGCCCTATCACCAGATCTTATTGTCTGTTCCTTATTTCACGATTGTCCGCATCTCAAAGAGCACATTTCTTCTTCGCCCATCCATTCTCTCACAGTTACCGAGTACCTTCTGTGTGCCAGGCCCAAGCTAAATGATGTGTGTGCCAATATCAAAGGCATGCATTCAAAAGGACGTGCCCACACGGGGCGAGTTCTTACTAATTTAAATAAAATGTCCCAGTGAGAACTGTGAAAGAGTAGCCTCATTGCTAAGTTTAAAAAAAAAAAAATCCTTTAGTGGGCAAAACAGAAAAGAGGTGGATTCAAGGCCACCTGTGGCTCAGGTCTCAGCATGCAGCATAAAACGCTTACTAGGCTCGCAGAGAATAAGTTAACAGGTAAATCAGGTTACGATGACCCCCAAAAGCATAGCCAAGGTCTTCGGTGGCAAATTATCTCACTTGAACCCTGGAAGGTGTCTGGTTTGCCTAGCAGGGCTCACGCTGGGGACTGATATTACCTGAAATGTAAAGGCTGTCTCTCCCAGGCAGTTAGCAACCATTAACTGGGCAGCTGCTACTTGGCCACTGCCTCTATTTTCTCTGATCAAAGAAATACAAATGGGTAAGTGTTGATTTGCATAAATGCTTGAAAAAACTGAGGAGGCACATTCCTGGTGTCAAAGAAGACTGAGGAAATCTGCTACACAGAAAGTGCCAGGAAAGCACCCACCTGCCTCCCCTTGGCTGTTTGCTAAGCCTTGCCCTAAAGGAGGTGAGGCTGGTTTCACCATTAAGTTTCACTTCCCAGGCAACTCCTGCCTTACTGCCTGTATGCACCACAACACACACACAAACACACACAGGCACATACACACACATACACATGCACACAGGCAGGCACACACACACACACACAGAGGCACACACAGGCACACACACATACATACACACAAGCACACACACACACAAGCACACACACACACACACACAGACACACATACACATACACATGCACACAGGCAGGCACACACACACACATACATACACACATTCACACAAGCACGCACACACACACAAGCACACACACACACACAGGCACACACACACACAGGCAGGCACACACACAAACACACACAGGCACACACCCATACATACACACAAGCACACACACACACACACACACACACACACACACACACACGCTGTCACCACCACTGACAGTAAGCCTTGGTGAGATCGCCACAGACCTTGAGATGCATTCGGAATCCTCAAGTGACCAAGGTCCACCTTTTACTTTCTTCCCTTTTGGTGGACAAAGAGTGTGGGTTTGGAGTCAGCTGGCCTCGAGTTCAAACCTTGTCTCTACTTCTGCTCATCCTTGCAAGTGGGGATGCTTCTTGGCCTCTTGAAAAGCCTGTCCCTTAGCTTAACATAGGAATATTTGTGTCCACGTCCAGGAAGAAAATCTTCACCAGGAATGTTTACATAAAAATCCTCTCCAAAGTGGAAGAATACAGTAGATGAGCAGGAGATCTTAGACCTCCTGCCCTAGTGTACAGTCCTAAGGCTTAGAATGAGTCAGTGGTGAGAAGAACCAACACTCAGACCTATGGGCATCTTGGCTCTGTCCTGGTCACAACTACAAGGCACACTGCTGTTCACTGCAGAGGGGAGACATACACGGCATGACTTCAAATGTCAACTCCTACCGTCTGTTAGTTCTACATGTGCAATGCACAGGTTCAAGGACTTACACACTTCACCCAAATTATGGAAGCAGCCCTGCCAAGTAGACATGGCTGTCCCCATTCATAAAATCCAGGTTCCATTAGCTTTAGAAGCAAGGCTGGGAAGGGTAGGGCTAGGAGCTCAATCTGGCTGGAGCTGTGGTTCTTATATCAAAAATCACGGCCCATCTGAGACAGCTTCTCAGGGAGCAATTCCTGGTGGTTGCATTAGTAACCCCCTGAGCTCAACTCCATGGAACTGTCAGGGTTAGGGAAGCCTGGGGCTCCATCTGCTGCTAAGGAGAGGCAGGTCCTGGAGAAGCTGTTTTAGGCCACGTCCAAATGAGAAATGCACTGGGAGCTTTCTGTGAAAGCTTTGGAAAGGAGAAAAAACTTCCATATATCTGACACCGCCTGCGGAAGCCACTAGGCGGGGTATTGTGTCAGATTGCTCATAATGAACCAAGAGTGAGATATTCAGTAAGGAACTGGGAGAATTATGATCGAGATGGTAGCATCGTCTTCCTCCGTAACAAAGGCGGTTCTAATTAGTGACAGAGAGTGAACAAAACCATAGACAGAGACGTGACTTTTGAGTAAATCAATCGAGCATTTGAAGGCAGATGTGTCCGGGGATTATCGCCTACCCTCGTGATAGTTAATCTCCGTCTCTCTTGAAAACGAATATTCACAAACAGAGATGACTGGGGTAGTCAGAAGCCTAGTAGGATCTGGCCAACGGAGTAAGGAAAAGATAATTGCGATTTTCGAAGTATAATATGTTTATGATAGGAAGATGTTCTAGTAAAAGCCTTACTTTGTTGCATGGTGGATGAATTAATGACTTGAAAGTAAAACTGTACTTGTCTGATAGTTTGTAACTGCCTCTCCAAACGATCCTGTCCGTTGACATCTACGAGCAGTTCTACTTGGTACCCCCTCCCTAGATGAAGCCTCCAAAAGGCAGGCCCACATCTCCCTCAAGAGGTGCTAAGGTCTTCTCAAATCAGCATGAGGCAGAGGATCCCTCCTGAGAAATTAAAGACTTCTCTGGGACTTATTCTAAATGGCTATCATTTAAAGTAAAAGAAATGTCACCCATCAGGCAGGCTTGGCTCTGTTCCAGGATGGTGAAGGCCAAATGAAGCCCAGAGGCCCTCCATGCTCTTTAGTGATCATCTGGCCCAGTCTTCTGACTGACTTAAAGATGGCCAACTGTTGGCAAGCAACAGGGTAAATAAAAATGAGAAGTTGCTTCCTAGCCACAAGAGCAGTTGGAATGTCTGAACCGAACCTCGATCCTGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGATCTGGCCTTCTCTCCCAAATTTGCACTGTGATTTCACCTCTAGGGAGTGACAGTGTCAGGGTGTGGAAGGGAGCAGGTGCCAGTACCGGGCAGTGGGTCTGAACACCCCATTTTGTCTGCAGGGGTATAGCTCTGACTCTCTTCTAGGATGCTGTACCGTGTACAGTGTCACGTGACATCAAGGAGCAAATAGGGTGGAGAAAGAGGCATCTTTTGACCTCAGGCATTATCCCCCTGGCCTGCTTCTCCACAAGTGTAAAACACATCAGCCCCAAACACAATGATTACTGACTAGAGCCAGGATGCTACGGCCCCTTCAAAAGATACTGAAATCCCTACCACCAGGAGAGGACCTGAGTGTGCCCTTATACAGAGAGGAGCACATTGCTACTATGATTAAGGGTCTTGACATTGGATATTTTCCTGAATTATCTGGGTAGACTCTAATACAATTGCATACATCTCCATAAAAGGAGAGAGAAATTCCTTCACACCCTGCAAAGAGGAGATCGCATTACAATAGGATTGAGGATGCTAACCTTAAAAGCAGCCACAAACCGATCCAGATGAACTAGGCTGATACAGAAACACATTCTACCCTCAGGCTTCCTTGAGGAAGTTCGGTGCTGCTGATGCACCTAGCTTGGCCCAGTAGTCCTTACTTTGGAATCCCAGACCCATAAACGGAAACCATAAAACGGAACCCTGTAGCTTTAAGTCTCCAAGCTTAGGGCAGTGTATTACAGCAACACCAGGACACCAGATTCCCAGTTATAGAAGGTGGCATACTCCACTTGGTGCCCAATAGCCACTGGCAGTAAACCCAGAGCTGAGGGGTATGAGCATGAGGGCGACCATTATGGCTCTCTATGGCCCTGGTCCAAGGTCTCCAATATAGTCTCCAGCATTCATCGGGTAACCTCTCTTGCCCTAAACCTCAGGGAGACTTTCTGAGCAACCGGAGCACTAGCAAACTGAGACTCGCTTTGTAACTAGAGCCTTGGCTCAGCTCCCCACACTCTGGGAAATGACCCCCAACTCGAACTCACAGATGGCTCAGAGGTTAAAAGAGCTTGCCGTTCTTGCCGAGGACCAGGGTTCGATTCTCGGTACCCGTGTAGGGCAACTCAGAACCACCCATAACTTCAACTCTGAGGGAAAGGACTGACTCCCTCTTGAGGCCTATGCTGACACTACACTCAAATACATAAGCCCCGCTCGAGTACATAATTAAGAATTAAAATAAGGGGNNNNNNNNNNNNNNNNNNNAGAGAGGCTGGCCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGGAACCAAAAAAAAAAAAAAAAGAATTAAAATAAACCTTAAAATAGCCTCCCACCCATACTCATGCAAGCAGCTGAAACCATCCTCAGTGACTGAAATATAGGACGTCAAAGTAGGAGGCGACCCTTTGGGGAAAAGGGTTCCGGGACAGGGAGATGGTGTGAGAGAATGATGGGAAGTGAACTGTCCCAGAGTCAGTATACGCACACACAAGGCTATAAAAGGAAGGGCCAGACACGGGCTAAAGCTTCGTAATTTAGAAGAGCCTAGACGGCCCTTGCCAGCGGGTTATTCCATCATCGCAGGTATTGGCAAGACATCTGAGGCCGGAAGTCAGCTGACTGCTCACGAACCAACCCAAATCAACATGCGCTCTAAGACTGAGCCATGGGGGGTGGGGGGGTGCTGGAAGTACCATGCTTCTAGAAGCCAATTACGACTGAGATAGCAAGGTTATAGAACGGGGAGAGAGAGAACTAGTTGTTAGAAGGGGAAACAAACCATTGCTCGCGGGGCCTGGCAAAGTAATCTGGCAACTAATCCGGTTCCTCCTTTCCTGTGTTGCTATGGTTTTGAACTGTAACCTAAACGTGTGGTTTAATCTTTTGTTGATAGGCTTACTGCTCTGAAATTGTACGGGCTGTTTATATAGACTCGAGTCTCCATTGCAACCAGCACAAGTTTCTGTTAAAAGCCAGTGGTGTTCAGTGAATGTTTATTTGACTTCTGGTCCTCCAAGTCCCACCAGGCTGTTTTGTGAGCACCAATGCAATTCTGTTTTCTTACAG
Seq C2 exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTCTTCCAGGGACAACCGCACAGCCTGTCACCCTGTCACAGGCTCTAGCTACCCCAGTAGCTGAAGCTACCCACAGAGCCACCTCAAAGCCATTTGCAGCATCTGTCACAAGCAGCTCCCGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004706:ENSRNOT00000006360:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.937
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]