GgaINT0081221 @ galGal4
Intron Retention
Gene
ENSGALG00000010583 | VIT
Description
vitrin precursor [Source:RefSeq peptide;Acc:NP_001019751]
Coordinates
chr3:31517293-31519044:-
Coord C1 exon
chr3:31518967-31519044
Coord A exon
chr3:31517374-31518966
Coord C2 exon
chr3:31517293-31517373
Length
1593 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TGTGTTTCATTTTGCTTCAGAGC
3' ss Score
9.24
Exon sequences
Seq C1 exon
AGGGCAAGCCAAGAAAGGGTGTGACATATCCATCAACTCTTGAATTCGCTTCCTCAAAGAGCACAGCTGTTAAACCAG
Seq A exon
GCAAGTAATTATGACTGATTTTCCCTTATATCTATTCACAACTATCTGTTGTAGCATCTCAACTGTGTAATAAAGAAAATTTAATAATCGAGATTCTGAAGATAATGTACCCCTCATGCTCATCACTGTTACTATCTCATTCAATTTTCTTGTGGTATTTTTTTATGTTAAGCATACAGAATTATCCCAGACAATTTCTATTTTTTGGTCTTTCCCAGATTTACAGGTCTCTGTTCCCACCTACTTTCCCCCTTACTTTAAGTCTGTGAGTATGGTGTTGTACTTGTTATATCTGAAGTAAGTCTTATGTTCTAGCTTTCTCTTAATGCTACTTGTGTTATCTCTTGGGACACTTGATGTGGAGAGTACAGTAATACATAATAATATTAACAATACAGATGGCAATGCTCAGCAGCTTTAGATAAGAATCATATGGTAAGGAGTTACTCTGTATAACTTGTTGAGCCTGCATCCCATTCTGCCAGATTCAACTCAGCTTAAATAATATATGTCAGTAATTTCTGCATCAAGATATACGTACAAATCTGTACCTAGTGGAATGTAAATGCAAAGGAATTGTAAACTAAAGGCTGGGCTTTGAGTGATGCACACTCAGGCTGAGTAACTACAACGTTCAGATGCCACTGTGCATGTGAAATCTAAAAATGAGGAAAGATCTGTGTACTTTCCTTCCAAGGACCAAAGAATAATGTATCGGAGAAGAGCAGAACTCCAAACAACTGCCATGCAACCTTGGATGGATGCACCCATTGACAGGCATTTGAATGCATGGGAAAGATGCACATTTCCTTACATCGCTCCTCACAGTGGATAAGCTCATGAAGTCTTGAACTCAACAAATAGCAAAAGCGTCACAATAGAGAAGTGTAGTAGTAAAAGATATTCCTTATCTTTTTTCTTTTTTTTTTGTTCACATTCCCAAGGAAAAGTCTGGAATTTATACAGTTGCAAAAAAAAAGCACAAATAAATGTCATTTCCATGATGGAGATGCTTCATGTACACTTGAATATCAGCTACCATGTAGCATGGCTCTTGATCAAAGACTTCTGAAAGGAATTAAATTATTTAAGCTGAGTAAAAATCCCCCTTTCCTTCTAAGTGAGCCCATAACATCCAGGATTTAGCCCCATGAAGATCTATCTGACAATGTCAGGCAAGAAAGAACTACATCTGAATGTGAGTTAGTGACTGAAATACCACACGCTAGTTGGTATTCACCAGACAACCTACACACACCAGGACCCTGACTCACATTAATCTTATGAGGATTGGTTTATTAGTGGTAAAACCCCGTGTTTATTGCTCACTTCAGAAATTCTGTTGACATTGGCAGGAGCTTTTGGGCAGTCAGATGCCTAAATGAAGCACTGAAAACTTGTGGCGACTGCTGTCTAGAGGCACTCATCCATCACTTTTTCTTTCCTAGCAAGGAAGCACTGATTAGACTGACCAAACTTTCTAATGCTAGGTGGTGGGATGCCTCCCTCTGGGGACTGATAACCTTCTAATAGAAAGCTTTAAATTATTTTATTCCAGAACTGTGTTTCTTAATGTGTTTCATTTTGCTTCAG
Seq C2 exon
AGCCTAAGAAGCCAGAGCAAGACCTAAAAGTTACAAAGAGTGCAGCCACATCTGATACATCAGGGAAAGCCTGGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583:ENSGALT00000017224:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF115933=Med3=PU(2.7=33.3)
A:
NA
C2:
PF115933=Med3=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]