HsaINT1046331 @ hg38
Intron Retention
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
Coordinates
chr2:36758969-36767285:+
Coord C1 exon
chr2:36758969-36759046
Coord A exon
chr2:36759047-36767093
Coord C2 exon
chr2:36767094-36767285
Length
8047 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
ATAATTCCATTTTCTTACAGGTG
3' ss Score
10.5
Exon sequences
Seq C1 exon
AAAGTAAACCCAAAAAGGGTGTAACCTACCCATCAGCTCTTACATACTCATCATCGAAAAGTCCAGCTGCCCAAGCAG
Seq A exon
GCAAGTGCTCACGTGTGATTGAATCTAAACCTTCTGAGTCCATGAACACGCGACGTGTTTTGGGAGATAGCGGAGAAATTAACATCTTAACCGGTCAAGCTCCACTGGCTCTGGCAATATTTTAACAGATGCCAGGAACATGGGCACAGAAATCAATGAGATCAGATGGCTGGGGCTGAAGAATGAAAGCTTTATTTTTTGTTTTTGCAATTCCGAGATTGTGTCTCTATATTTGTGTCATTTTCATTCAGATTGACTGTTGCCTTGAGTTTTAATGTATTGTTGCTTTAGAAAATGACATGACATTCTGTCCGGAAATGTTTCCTGGCAGCTAAAAGGAAAAAGCTGTATCTACTTAGATATGAAATGAAGAGAAGCAAAGAGAACGAGGTGGTTTATGTGATAACAGCAAGCTGCTCATCCAAATAACCCAGGCCAAAAATACACTGTCTACAAGGTTGTGCCAACTCAGCTTTCATGTGAACCACAAAAGGGAGTATCGGTAGACCTCAGGCCAAGAAAATACCTTTTTCCAGGTTTCTGTGTTAAATCAAGAACTGTACTATGCATTATTGTATCTCCAGAGGTGTTTTGATTTCCCACACAAAGAGAAACTGTGAGTCGCTTTATAACGGGATTTTGCATTGCTTCCAGAAACTTGATAGGCTAGCTAATACATTATGAGCCTGATAGTTCAGGTTCTGTTCATGTACTTAAGGTGAACACGGTTTAAGAATAGCAGTAGAACTTAGCATTTATTGAGCATTTGCTGTATGCCAGGCATCATTCCAAGAATTTTACCTGATCATTGTGTTTAATCACCGTAGACCACCATCGGCCTATACTATTACTCTGGCTGAGGAAAATGAAGCACAGAGAAGTTAAGTAAATTAACTTCCATCAAACAGAAACCCCTCTCTAAACCACCATTCTATATTTTCTTTCTCTTTTTTTTTTTTCTTTTTTTGAGACGGAGTTTCACTCTGTTGCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCCCTACAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGTGACTACAGGCACCTGCCACCACGCCCGGCTAATAGTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCCTCCCGCCTCGGCCTTCCAAAATGCTAGGATTACAGGCATGAGCCACTGTTCCTGGCCCATTCTAGATTTTCTTATGCTAATAGTACGTATATAGATCGCTGATTTCCTGATTTGAGGAGCCTTAGCATACAAATAAGGAATTTTTTTTGTCTTTTCTCTTAATTACTGCTCCACCTCTATCTTTAATTACTTTTTAATGGATCCAGTGGTCTAGTCCTGTTTGTTTAGTTTCAAGGATAGAGCTGTTCCCCACCTCCACCCGTGAACTGGCAGTGGGTCTGGTGCCTCGTGGGCCATTTCTGAGATATCGCTTGTCCTCTTTTGACCTGGGCACAGAGACGAAGAATGGGTGACAGGTCTCCTTAAGTGGCTGGCATCTCTGTTGTTTCATCTGGCCCTGTGGCTCTGCAGAGCCAGAGGAAAGACTGATTCCTGGGTAGGTGATGTGTGTAGATATCGAAGGCAAGGAGACAGTGTTTAGTTTCATCCTGGCACCCTCTTGTTGGGCCAGAAATCTGTGCCCCTCACTCCTTTCTCCAAGGTAGATACGGATGCCTGGTTCCAGCAGCCCCCTGGGGCAGCCCCTTCCCACAGAGCCATGGGAACAGCCAGGCTTCTCTTTGGCACCCTCAGGTCTGAGAACTGGGATGGGGTGAGGTCACCTCCCTCCTCGCATTTTGCTGCATGAGCCCTGCTGGCATGAGCCACTCCAGCTGCACCCCTCCCCCTCTCAGAGATCCCTAGGGCAGAAACAGTCCCCAGGTTCACATAAAGCCCCCAACTTCAGGGACCACATGTCAAGCACCCCCTATTTTTACCATGAGTGGAAGAGCACTTCTAGACTCCCAGAATACACCCCCAAAACTCTGCGAGCTCTGTTGCTGTATTGCACACGTGTGATGGATCTGCAGAAAGATTGGTTGGAAATAAGATGCCCACCTGCCCTCCTGGCAGGTCCCCACAATCTTGACGAATGACTCTCTTAAAGCACCTTCATTTGGCTTGGGTACGACAAAGTGTGAAGGAAGGGAGAAAATATCTTCTGACTGTGAACTCAGCACCCTCTAAAAGGTGGCTTCTGACCCCTCCTGTTTTTCGGGTCCTTTCCTTCTGTCCACTGGCCTGGGATGGGGGTGTCGGGGGTGTTGTGCAGGTTCTACTGGAATGGCCTCACCCGTGGGAAGTTCAGTGGCATCTCTCCTGTTTTGGAAAGGGGTACTTGTGGCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCGCGAGGTCAGGAGATGGAGACCATCCTGGCTAACATGGTGAAACTCCGTCTCTACTAAAAATACGAAAAATTAGCTGGGCGTGGTGACACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGGCACTGCACTCCAGCCTGGGTGACAGAACGAGACTCCATCTAAAAAAAAAAGAAAAAAGAAAGGAGTACTTGTGCCCTTCTGGCTTCAGCTTTGGGCCGTATCTGGACAGCAGGAAGGGCCACATAACCTTCTGTGACTGTAGTCGTCTGTCCAGTACTTTCTCTGTGCCACACACCTGCACTACAGTAACCCCGAGGTAGAGTGCCAGTATCTTCCCTTTTCAGATAAGGAAGCTGACCTTGAGAGAGGTTTAGTAACTCACCCAAGGCCATAGTTCTAAGCAGCCCAAAAAGTATGCAAACTCGGTATCACCTTAAAGCAGGGAAAGTTGCAGGGAAAAGAGTGTAGGGCAGAGAAACTATAGCCAAATGATAACTCGGATAATAAAAGTCTACTTGGTTTGTACGTTCTCCGCAGCAGAGACAATTTCTAAAACTATCTATTTACCCCAAGCACCATTCACCCCCAGCAAGCACTTGTTCCAGATGCCTGAGTCATTGACATCCACAAGGAGTGTGGATAGCCAAGGGTGCTTTTCGTGAAATTTATAAACTAGCAAGAGCCAAGCATTGCTGATGTCACTTGCCCCTTTACCAAACCGTTTAAACTTTTGATGACAGTATCACTAGGCATTACTATCATCTCCTTGTTACTAGATGATCTATGATGGTCAGAGTCGGAAAAATTATTTACTCCTTCATTTTATTCATTCATTCAATGTTTACATTGAGTGAGCATCTCCTACGTGCAAGACCCTGAGCTAAACTACCAGCATTCCAACATAAAAGGGATTCTTGGGGATAGAAGAGCCTCTCTCTGTAAAGTCTTAGTCCCCAAGTCCTAAGTCCTTAGTCTTACTTAGGAGTAAGTTTTCACGAATTCAAATAAAAAATTTCAATGAGTACAATTAAAGGAGTGGTCCCCTTGGTCTTCCTTAAACCATAGAATTCCTTTAGTCATTGGGGAAGCAGAAGAGATGAAGGCTGAGCAGCTGTTCAGGTCTCCGCATGACCCTAAAAAATGTGTCCCGTCTCTCTGACAATATGAATTAACAGGCTAATCAGGCTAGGATGACCCCCAAAAGCATGACAACCTTCTACCATGGGAAATTATCCCCCTCAAAAAATAGAAGGCACTTTGATTTGCCCTGTGCGGCTCACACTGAGAACAGGCGTTCCCTGAGGTTTAAATACTGTTCCCCCACCACCGCGCCCCAACTGCCCTGGCATTTAGCAACCATTAGGCAGGCAGCTGCTTTTTGGCTAGAGCCTTGAGCTAAATAAAAACAGGGAAGTGTTGCTTTGTAGAAGTTTTTTTAAAAAAAACTAGGAAGGCACATTCCTAGTATCACAGCAAGAAAAGGGAAAGTAAATCTTTGTTAGAGGCTACTGAGCTAGCATGGGAAAAACCTCTTCTGCCTTCCCTGGCTGTCTGCTGAGTCCCCCGCTGTGGTTCTCAAATGAGAATTCCACGGCCCACCCTGGGTCCAGTGAGTCAGAATCTCCACGACCAGGGCCCTGGAACCTGCATTTTAACACCTCCAGTGTGGTTCTAACGATGAGCCAGGTGTGGGGAGTGGTGTGGCACCACCTGCTATGTTTGAGAAGGTGGCTGCCTGGAGCTCTTCCGACCACACCCAAATGAGGAATATGTGTAGAGTTTAAGGGAAGTTTTGAAATGCTTTCCCATAAAAATCTTTGAAAAAAGATCAAAACTTTATGTAGCTGAGATTGCAGGAAGAAACTATTTTACTAGTTTTTTTTCAAATGGCTCAAAAAGAACTTGGTTCCATGAAGAATTCACCTTGGATCAAATCAAGGGTATTATGTTCAGTGAGGAATTGGGAGCAATTGGGATAGGAGGAGTAATTTTTCTCTATCTTCCCTTTTTTTTTTTTTTTTTTTTTTTGAGATGAAGTTTTGCTCTTGTTGCCCAGACTGGAGTGCAATGGCTCGATCTCGGCTCTCCACAACCTCCGCCTCCCGGGTTCAAGCCATTCTCCTGCCTCAGCCTCTGGAGTAACTAGGATTACAGGGATGTGCCACCACCTCTGGCTAATTTTGTATTTTTAGTAGAGACAGAGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCATCTCGGCCCCCGCAAGTGCTAGGATTACAGGCGTCTATCTTCCCTCTTAAAGACAGTTGTAATCCATGAAGGAGAGCAGGCAAAAACAACAGCCCACGGAAGCCCGTGGAAGCCCATGGCTGTTAGTTGAATTTATGATACACTTGAAAGCATCTGCATTATGAGCAAGTGATACAAAGACTGCCCTCAGGATCTTCAGCCTTTCTTTAGCAAATCAATTTTAGCAAAGGCAGACTGGGATGGTCAGCAGCCTTGGGATTAGCCAATGGTGTGACAAAAAGATAATTCCGATTTTCAATATATAATAAGTTTTAGGTGGCAAAAAGTGTTCACTATTTGCAAGTAGAAGTTTTATTTTTAGTACATTGCAGTTTCATGAATCATTTACAAGTAAAATAGATTGTCAGTTTATGTATGTTTCTTTCCAAATTATTAATTACATCCTATTTCATAAAATATACAAGTGGATTTGTTAAATGGCTTTTCCCTAGATGAAGTAGGTCAAACCCGGGCCTGCATCTCCGTAAGGAGGCAATAATGCCTGGTAGCATTACCAGAGGGTAAGACGGAGAAGTACTTTGGAGAAATTAGAAACTTCCCTAGTACTTGTTATGAAAGCTCAAACTCTTTAAAATAATGGAAATGTCATAAATCAGGCAGATTCACTTTTGCCTGAGGATGGCTTGAAGGAGGCTGCTGTGAGCTCTTTAGTGATTTGTCTGACACAGGCTACAGGCAAATTTAAAGGTGACCAACTTAGCAAGAAACAAGGCAATTGAAAGATCGGTTTCCTACCTTGACCAGCTAATGCCTGCAAGAGCAGACCGAATGGCTGAATTCCAACCCGATTCCAGGAATACTGTTTGCTGACCTGCTGTCTTAAGTCAGTGCTGTGATTCCTGCAAAAGACGGCAGAGTCAGGGTGGGGAAATGAGCAGGTGCTGCTGTTGGCGGTGGGTCTAAACACCCCACCACACATTTGTTTGCATCACTTGTCCAGGACTATGATTCTGGCACTATTTTCCTGGATGTTATACAATGTCAAAGGGGAAGGTGGATGGTTCCCACCAAGACAGAAGCACCTTCTTATTTCAGATGCTATCTTCTTGGTCTGCTGTGCTGTGTAACAAAAATGTATCAACCCCAAGCAGAGTTAAGGCCAGAGCTGGGATGCTGTGGTAGGCTGAAAAACACCCTGGAAAAGATATCCATGTCCTAATCCCTGGAACCATTGAATGTTTCCTTATATGGAAAAAATGTGGGGAGCCTTTGCTAATGTGATTAAATTAAGGATCCTGAGATCGTGACGGGGCGGTTATTCTGGATTCCCCAGGTGGGCTCTAAATGCAATCACTGGCATCTTTGTAAAAGGAAGGCAGAGGGAGATTATTTCACATCCATAGAGGAGGAGGTTGTATTAGTTCGTTCTCACACTGCTATAAAGACACTACCCAAGACTGGGTAATTTACAAACAAAGGAGATTTAGTTGACTCACAGTTCCACATGGCTGGGGAAGCCTCATGAAACATACAATCATGGCAGAAGGGGAAGCAGGCATGTCTTACATGGCAGCAGGCGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGAAAAACTGCCTTATAAAACCATCAGAGCTTGTGAGAACTCACTCACTATCATGAAAACAGCATGAGGGACACCGCCCCCATGATCCAATCACCTTCCACCTCATCCCTCCCTTGACAGGTGGGGATTATGGGGATTACAATTTGAGATGAGATTTGGGTGGGGACACGGACCCAAACCATATCAGAGGTCATATGACGACGGAGCAGAGAAACAACTGAAGATGCTGGCCTTGAAAACTAAAGTGGCATGGCCACAAGCCAAGGAATGCCAGCAGTCAGCAGAAAGCAGAAGAGGCAAGACACAGAGTCTACCCTATAGCCTCCTGAGAAAGCTCAGTGTTGCTGACACCTTGAGTTTGACCCAGTGATGCTGATGTCTGACTTCTGGCTTCCAGAACTGTGAGAGAATAAATTTCTGTCATTTTAAGCCACCCAGTTTGTGGTAGTTTGTTACAGCAGCCCTAGCAGCTGATACAGGTACACAGGGACAGAAGCTGGCATGCCCCAATGGGGCCCAGCAGGCACAAGCAACAGTGGGTTGTTCCTTCCCAGGACCGAGGAGCTGTTCACTTTGGGGGCCACTGTGTGTCTCCCTGAGAACTCACAGTTCTCAAGACAAACCCCAATGCCCAGTGGGTAGCCACTTGTCCCCTTGCTCTAAACCTTCAGAGATATTCTCAGAGCACTAACAAACTGAGACTTGCTTTATAGGGAGCCAACTACAGCGGTGTTTAAAAGGAGAGAAGTGATCTAAATCATCACACGTGGATGAAGAGCACCATTTAGAAGTCGAATCTAGGCCGAGCACAGTGGCTTGCACCTGTCATCCCAGAGCTTTGGGAGGCTGAGATGGAAGAATTGTTTGAGGCCAGGTGTTCAAGATCAGCCTAGGCAACACAGGAAGATGCTTTCTCTACAAAAAAAAAATTTTAAATTAGGCAGGTATGGTGTCTTGCACCTGTAGTCCCAGCTACTTGGGAGGTTAGGTGGGAGGATCACTGTACCCCAGAAGTTCGAGGCTGCAGTGAGCTATAATTGTGCCACTGCACTGCAGCCTGGGTGACAGAGCAAGATCCTGTCTCAAAAAAGAAAAAAAATGTAGAATCTGGATCATCCTTGCCATCCAGGTAGTTCTATTACCCCATTTTACAGATTAGGAAACTGGGGCCCAGAAGAGTTGACTAGTCATGAACCAACCTAAACCAGCGCATCTAAAACGTATTCTCTAAGACTAGGTCATAATGAAAGCCCCAAATGCACCTTCTGTCTTCTATTCCAAGGCCAATGCTAATCAAATCAGCAAAAAACAAAAACAAAAAAAAATGTACATAAACCATTGCTAGTGGTGCCAGGCAAATTAATTCAGCAATTAATCATGTTCTGCCTTGTCTATGTTCTATGTTGCTATAGTTTTGACCTGTCATTTATTTTATTGCTATTGAATCTTTGGTTGATTGAGTGATTGCTCTGAGAGCATACATTCTTTCAGGCAAGAATGTGGCTGTTACCTGGGTTTCACCCTTCACCGTGGCTAGCACAGCTCTGTGCTCATAGCTAGTGTTCAATCAACATTTATTTTATTTCTAGTTCTATAAGAGTGTACAGGTTATTTTGTGGGCCTTGGTATAATTCCATTTTCTTACAG
Seq C2 exon
GTGAGACCACAAAAGCCTATCAGAGGCCACCTATTCCAGGGACAACTGCACAGCCGGTCACTCTGATGCAGCTTCTGGCTGTCACTGTAGCTGTGGCCACCCCCACCACCTTGCCAAGGCCATCCCCTTCTGCTGCTTCTACCACCAGCATCCCCAGACCACAATCAGTGGGCCACAGGAGCCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221:ENST00000497382:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.749
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains