HsaEX0070381 @ hg38
Exon Skipping
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
Coordinates
chr2:36758969-36773847:+
Coord C1 exon
chr2:36758969-36759046
Coord A exon
chr2:36767094-36767285
Coord C2 exon
chr2:36773791-36773847
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATAATTCCATTTTCTTACAGGTG
3' ss Score
10.5
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
AAAGTAAACCCAAAAAGGGTGTAACCTACCCATCAGCTCTTACATACTCATCATCGAAAAGTCCAGCTGCCCAAGCAG
Seq A exon
GTGAGACCACAAAAGCCTATCAGAGGCCACCTATTCCAGGGACAACTGCACAGCCGGTCACTCTGATGCAGCTTCTGGCTGTCACTGTAGCTGTGGCCACCCCCACCACCTTGCCAAGGCCATCCCCTTCTGCTGCTTCTACCACCAGCATCCCCAGACCACAATCAGTGGGCCACAGGAGCCAGGAGATGG
Seq C2 exon
ATCTCTGGTCCACTGCCACCTACACAAGCAGCCAAAACAGGCCCAGAGCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221_MULTIEX2-4/10=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.749 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000379242fB29761
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAAGGGTGTAACCTACCCA
R:
ATCAGCTCTGGGCCTGTTTTG
Band lengths:
122-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development