GgaEX1063134 @ galGal4
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
vitrin precursor [Source:RefSeq peptide;Acc:NP_001019751]
Coordinates
chr3:31515026-31517373:-
Coord C1 exon
chr3:31517293-31517373
Coord A exon
chr3:31515746-31515952
Coord C2 exon
chr3:31515026-31515076
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCAATGTTCCTACAGGGG
3' ss Score
9.39
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGCCTAAGAAGCCAGAGCAAGACCTAAAAGTTACAAAGAGTGCAGCCACATCTGATACATCAGGGAAAGCCTGGGAACAAG
Seq A exon
GGGACACTGTCCGCAAGGTGTATCAGACATCACCTGTACCAATGCCAACCACACAAATGGCAGCCACAACACCAACCCCAACAACCACAACCACAGATCCTTTCAGCACAACACCAAAGCCAACCACAACACCTGCAACAACAAGAACCACAACAGACTCAGCTGCAGCCAAGCCTCGACCTGGACTGCAGAGGGTCAGGGATACAG
Seq C2 exon
GTTCTAGCAGCGTCCACCCTGCATATTCCTCTGTGGCAGCCGCAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(8.2=100)
A:
PF115933=Med3=FE(20.9=100)
C2:
PF115933=Med3=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]